View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7024_high_4 (Length: 324)
Name: NF7024_high_4
Description: NF7024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7024_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 18792185 - 18791882
Alignment:
| Q |
20 |
ttattgagactttctccacaagtagaagagtttattctaagcaaagaatctcaaaggaagaagcatagttacaactctggttttgtagtttcaagtagta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18792185 |
ttattgagactttctccacaagtagaagagtttattctaagcaaagaatctcaaaggaagaagcatagttacaactctggttttgtagtttcaattagta |
18792086 |
T |
|
| Q |
120 |
ggctcaatgatagtgaaattaccattcagatttcatgttacactgtccaaaagattccactttctgagatcttgatttgtttggaaaatgatggcctttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18792085 |
ggctcaatgatagtgaaattaccattcagatttcatgttacactgtccaaaagattccactttctgagatcttgatttgtttggaaaatgatggcctttt |
18791986 |
T |
|
| Q |
220 |
gctgcttaatgtttcttcatcaaagacctttggagggagagtcttctataatttgcatttccaggtgtgttaatttcactaggcttgattattttcttcg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18791985 |
gctgcttaatgtttcttcatcaaagacctttggagggagggtcttctataatttgcatttccaggtgtgttaatttcactaggcttgattatttatttcg |
18791886 |
T |
|
| Q |
320 |
acat |
323 |
Q |
| |
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|||| |
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| T |
18791885 |
acat |
18791882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 18782709 - 18782434
Alignment:
| Q |
20 |
ttattgagactttctccacaagtagaagagtttattctaagcaaagaatctcaaaggaagaagcatagttacaactctggttttgtagtttcaagtagta |
119 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18782709 |
ttattgggactttctccacaagtagaagagtttattctaagcaaagaatctcaaaggaagaagcatagttacaactctggttttgtagtttcaacaagtt |
18782610 |
T |
|
| Q |
120 |
ggctcaatgatagtgaaattaccattcagatttcatgttacactgtccaaaagattccactttctgagatcttgatttgtttggaaaatgatggcctttt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18782609 |
ggctcaatgatagtgaaattaccattcagatttcatgttacactgtccacaagattccactttctgagatcttgatgtgtttggaaaatgatggcctttt |
18782510 |
T |
|
| Q |
220 |
gctgcttaatgtttcttcatcaaagacctttggagggagagtcttctataatttgcatttccaggtgtgttaattt |
295 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18782509 |
gctgcttaatctttcttcatctcagacctttggagggagagtcttctataatttgcatttccaggtgtgttaattt |
18782434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 18803643 - 18803368
Alignment:
| Q |
20 |
ttattgagactttctccacaagtagaagagtttattctaagcaaagaatctcaaaggaagaagcatagttacaactctggttttgtagtttcaagtagta |
119 |
Q |
| |
|
|||||||||||||||||||||||| | || ||| | ||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
18803643 |
ttattgagactttctccacaagtaaatgaagttaatataacgaaagaatctcaaaagaagaaacatagttacaactctggttttgtagtttcaacaagtt |
18803544 |
T |
|
| Q |
120 |
ggctcaatgatagtgaaattaccattcagatttcatgttacactgtccaaaagattccactttctgagatcttgatttgtttggaaaatgatggcctttt |
219 |
Q |
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|||| |||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||| ||||||||||| |||| |
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| T |
18803543 |
ggctaaatgatagtgaagttgctattcagatttcatgttacactgtccacaagattccactttctgagattttgctatgtttagaaaatgatggaatttt |
18803444 |
T |
|
| Q |
220 |
gctgcttaatgtttcttcatcaaagacctttggagggagagtcttctataatttgcatttccaggtgtgttaattt |
295 |
Q |
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| |||| ||||||||||| || | |||||||||| ||| ||||||| ||||| ||||| ||||||||||||||| |
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| T |
18803443 |
gttgctaaatgtttcttcgtcgcaaacctttggagagaggatcttctacaatttacattttcaggtgtgttaattt |
18803368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 35564347 - 35564462
Alignment:
| Q |
170 |
aagattccactttctgagatcttgatttgtttggaaaatgatggccttttgctgcttaatgtttcttcatcaaagacctttggagggagagtcttctata |
269 |
Q |
| |
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|||||||| || |||||||||||||| ||||| |||||| |||| ||| | || ||||| |||||| || || |||||||||||||| ||||||||| |
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| T |
35564347 |
aagattcctctatctgagatcttgatgtgtttagaaaataatggtcttcttctacttaactcttcttcttctaaaacctttggagggaggctcttctata |
35564446 |
T |
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| Q |
270 |
atttgcatttccaggt |
285 |
Q |
| |
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| |||||||| ||||| |
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| T |
35564447 |
acttgcattttcaggt |
35564462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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