View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7024_high_7 (Length: 223)
Name: NF7024_high_7
Description: NF7024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7024_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43616701 - 43616896
Alignment:
| Q |
1 |
tcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttg |
100 |
Q |
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| T |
43616701 |
tcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttg |
43616800 |
T |
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| Q |
101 |
tggcttgtacttcaggtaccattaatttaatttcaatttgcggtataaggtttagaatgatgaaaaaatttgtgttacattatgaattctctgcgt |
196 |
Q |
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| T |
43616801 |
tggcttgtacttcaggtaccattaatttaatttcaatttgtggtataaggtctagaatgatgaaaacatttgtgttacattatgaattctctgcgt |
43616896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43610076 - 43610206
Alignment:
| Q |
1 |
tcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttg |
100 |
Q |
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|||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||| |
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| T |
43610076 |
tcatcacaactatcaacaacatgaagatagtgaatcatatgacaaaaaatggattttgggttctttactcttgttcctaactaccattacctggagtttg |
43610175 |
T |
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| Q |
101 |
tggcttgtacttcaggtaccattaatttaatt |
132 |
Q |
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| T |
43610176 |
tggattgtacttcaggtagca-taatttaatt |
43610206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43603667 - 43603798
Alignment:
| Q |
1 |
tcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttg |
100 |
Q |
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|||||||||| ||||| ||||| || || ||||||| |||| |||||||||||||||||| |||| ||||||||||||| ||| |||||||||| ||| |
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| T |
43603667 |
tcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtggagtttg |
43603766 |
T |
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| Q |
101 |
tggcttgtacttcaggtaccattaatttaatt |
132 |
Q |
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||| ||||| |||||||||| || |||||||| |
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| T |
43603767 |
tggattgtatttcaggtaccgtttatttaatt |
43603798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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