View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7024_low_1 (Length: 429)

Name: NF7024_low_1
Description: NF7024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7024_low_1
NF7024_low_1
[»] scaffold0014 (2 HSPs)
scaffold0014 (15-215)||(100942-101142)
scaffold0014 (285-413)||(101211-101342)
[»] chr6 (3 HSPs)
chr6 (346-399)||(6617548-6617601)
chr6 (383-412)||(6617618-6617647)
chr6 (287-327)||(6617423-6617463)
[»] chr3 (1 HSPs)
chr3 (114-205)||(4508798-4508890)
[»] chr4 (3 HSPs)
chr4 (107-185)||(346311-346389)
chr4 (115-215)||(39118029-39118130)
chr4 (110-149)||(27879546-27879585)
[»] chr7 (2 HSPs)
chr7 (107-171)||(29315495-29315559)
chr7 (107-171)||(29316463-29316527)
[»] chr1 (2 HSPs)
chr1 (121-165)||(26230008-26230052)
chr1 (109-185)||(5284476-5284550)
[»] chr2 (1 HSPs)
chr2 (107-166)||(33833699-33833758)
[»] chr5 (2 HSPs)
chr5 (22-63)||(1350346-1350387)
chr5 (107-206)||(18514674-18514774)


Alignment Details
Target: scaffold0014 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 100942 - 101142
Alignment:
Q  15 ctgtgccgatataggttgaattatataatctgaactgtttgtcccttgattttataatctnnnnnnngcaagaaacccgccctagtgttcgagtgttcag 114  Q
    |||| |||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||       ||||||||||||||||||| || ||||||||||    
T  100942 ctgtaccgatacaggttgaattatataatctgaactgtttttcccctgattctataatctaaaaaaagcaagaaacccgccctagtttttgagtgttcag 101041  T
Q  115 attaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaacactcaactcggattacataaccgaaaatctcatgggtattatcg 214  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  101042 attaaaaaatccaaatcgatgaaaaactcatttttcaaccccaaaacaaggggaacactcaactcggattacagaaccgaaaatctcatgggtattatcg 101141  T
Q  215 t 215  Q
    |    
T  101142 t 101142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 285 - 413
Target Start/End: Original strand, 101211 - 101342
Alignment:
Q  285 gattttttacctcaatgccgaaccaatgtgcatccaaaacaccataaatgagtgaactaaactcataaatgttgatagctatgataattttgtattatg- 383  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||     
T  101211 gattttttacctcaataccgaaccaatgtgcatccaaaacaccataaatgagcgaacgaaactcataaatgttgatagctatgataattttgtattatga 101310  T
Q  384 --aataataaattaagattatttagcaatctc 413  Q
      |||||||||||||||||||||||| |||||    
T  101311 ataataataaattaagattatttagccatctc 101342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 6617548 - 6617601
Alignment:
Q  346 ctcataaatgttgatagctatgataattttgtattatgaataataaattaagat 399  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  6617548 ctcataaatgtagatagcaatgataagtttgtattatgaataataaattaagat 6617601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 412
Target Start/End: Original strand, 6617618 - 6617647
Alignment:
Q  383 gaataataaattaagattatttagcaatct 412  Q
    ||||||||||||||||||||||||||||||    
T  6617618 gaataataaattaagattatttagcaatct 6617647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 6617423 - 6617463
Alignment:
Q  287 ttttttacctcaatgccgaaccaatgtgcatccaaaacacc 327  Q
    |||||||||||||  |||||||||||||||||| |||||||    
T  6617423 ttttttacctcaaaaccgaaccaatgtgcatcctaaacacc 6617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 4508890 - 4508798
Alignment:
Q  114 gattaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaacactcaactcggattacataa-ccgaaaatctcatgg 205  Q
    ||||| ||||| | ||| ||||||||||||||||||| |||| ||||||||||||| |||||  |||||||| | || | |||||||||||||    
T  4508890 gattacaaaatccgaattggtgaaaaactcatttttccaccctaaaataaggggaaaactcatttcggattatagaatctgaaaatctcatgg 4508798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 346311 - 346389
Alignment:
Q  107 gtgttcagattaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaacactcaactcggatta 185  Q
    |||||| ||||| ||||| ||||| ||||||||||||| ||||  |||||||||| ||||||| |||||| | ||||||    
T  346311 gtgttcggattataaaatccaaattggtgaaaaactcaatttttcaccccaaaattaggggaaaactcaatttggatta 346389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 39118130 - 39118029
Alignment:
Q  115 attaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaacactcaactcggattacataa-ccgaaaatctcatgggtattatc 213  Q
    |||| ||||| | ||| ||| ||||||||||||||||||||||||| | || ||| |||||  |||||||| | || |||||||||||||||| ||| ||    
T  39118130 attataaaatccgaattggttaaaaactcatttttcaaccccaaaacatggtgaaaactcatttcggattatagaatccgaaaatctcatgggcattttc 39118031  T
Q  214 gt 215  Q
    ||    
T  39118030 gt 39118029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 27879585 - 27879546
Alignment:
Q  110 ttcagattaaaaaattcaaatcggtgaaaaactcattttt 149  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  27879585 ttcagattataaaattcaaatcagtgaaaaactcattttt 27879546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 29315559 - 29315495
Alignment:
Q  107 gtgttcagattaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaaca 171  Q
    |||||||||||| |||||| |||||||||||||| ||| |||||   ||||||||||||| ||||    
T  29315559 gtgttcagattataaaattaaaatcggtgaaaaattcagttttctttcccaaaataagggaaaca 29315495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 29316463 - 29316527
Alignment:
Q  107 gtgttcagattaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaaca 171  Q
    |||||||||||| ||||||||||||||||||||| ||| |||||   || |||||||||| ||||    
T  29316463 gtgttcagattataaaattcaaatcggtgaaaaattcagttttctttccaaaaataagggaaaca 29316527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 26230052 - 26230008
Alignment:
Q  121 aaattcaaatcggtgaaaaactcatttttcaaccccaaaataagg 165  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||    
T  26230052 aaattcaaattggtgaaaaactcatttttccaccccaaaacaagg 26230008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 5284476 - 5284550
Alignment:
Q  109 gttcagattaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaacactcaactcggatta 185  Q
    |||| ||||| | ||||| |||||||||| |||||||||||| ||||||||| || ||||| |||||| ||||||||    
T  5284476 gttcggattatataattcgaatcggtgaacaactcatttttc-accccaaaacaa-gggaaaactcaattcggatta 5284550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 33833758 - 33833699
Alignment:
Q  107 gtgttcagattaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggg 166  Q
    |||||| ||||| ||||| ||||| ||||||||||||||||||| |||| |||| |||||    
T  33833758 gtgttcggattataaaatccaaattggtgaaaaactcatttttccaccctaaaacaaggg 33833699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 1350346 - 1350387
Alignment:
Q  22 gatataggttgaattatataatctgaactgtttgtcccttga 63  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||    
T  1350346 gatatagtttgaattatataatccgaactgtttttcccttga 1350387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 18514774 - 18514674
Alignment:
Q  107 gtgttcagattaaaaaattcaaatcggtgaaaaactcatttttcaaccccaaaataaggggaacactcaactcggattacataa-ccgaaaatctcatgg 205  Q
    |||||| ||||| ||||||  ||| ||||||||||| ||||||| |||| |||| || ||||| |||| | |||||||| | || ||||||||| |||||    
T  18514774 gtgttcggattacaaaatttgaattggtgaaaaacttatttttccacccgaaaacaaagggaaaactctattcggattataaaatccgaaaatcacatgg 18514675  T
Q  206 g 206  Q
    |    
T  18514674 g 18514674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University