View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7024_low_3 (Length: 420)
Name: NF7024_low_3
Description: NF7024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7024_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 33991751 - 33991348
Alignment:
| Q |
1 |
cttaacggaggtgagctatgtaggagttgagcggagtgggttagaggctcatagcaagtgtcagtacccttgggccaactccgaacaactnnnnnnnnnt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33991751 |
cttaacggaggtgagctatgtaggagttgagcggagtgggttagaggctcatagcaagtgtcagtacccttgggccaactccgaacaactaaaaaaaa-t |
33991653 |
T |
|
| Q |
101 |
agcttcatgaatagagatttaatgcaaaagaaaaatcaatcaaaaagcataagggttgacattactgcttttaattaacttagcaagctaagaaccaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991652 |
agcttcatgaatagagatttaatgcaaaaaaaaaatcaatctaaaagcataagggttgacattactgcttttaattaacttagcaagctaagaaccaaag |
33991553 |
T |
|
| Q |
201 |
cagaattgtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991552 |
cagaattgtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataat |
33991453 |
T |
|
| Q |
301 |
ccctaacaaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattcacttgccccctaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991452 |
ccctaacaaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattcacttgccccctaaga |
33991353 |
T |
|
| Q |
401 |
aaatt |
405 |
Q |
| |
|
||||| |
|
|
| T |
33991352 |
aaatt |
33991348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 208 - 385
Target Start/End: Original strand, 42867826 - 42868003
Alignment:
| Q |
208 |
gtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaac |
307 |
Q |
| |
|
||||||||||||||||||| || || |||| || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
42867826 |
gtacctttgcaattacaggacgggccattgaggtcccaagcaaatacttcctctcataaatggcaccagcacgcaggcaaggaaatacgtaatctttaac |
42867925 |
T |
|
| Q |
308 |
aaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattc |
385 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || || ||||| ||||||||||| || |||| ||||| |||||||| |
|
|
| T |
42867926 |
aaattcctccttcaagtcctttacgactaattgggaggctccactggcttttgctttggcttccaaaccatccaattc |
42868003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 208 - 385
Target Start/End: Original strand, 18854669 - 18854846
Alignment:
| Q |
208 |
gtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaac |
307 |
Q |
| |
|
||||||||||||||||||| || || |||| || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
18854669 |
gtacctttgcaattacaggacgtgccattgaggtcccaagcaaatacttcctctcataaatagcaccagcacgcaggcaaggaaatacgtaatctttaac |
18854768 |
T |
|
| Q |
308 |
aaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattc |
385 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||| || || |||| ||| || || |||||||||| |||||||| |
|
|
| T |
18854769 |
aaattcctccttcaagtcctttacgactaattgagatgccccactggatttggctttagcttctaaaccgtccaattc |
18854846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University