View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7024_low_5 (Length: 395)
Name: NF7024_low_5
Description: NF7024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7024_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 44000254 - 43999910
Alignment:
| Q |
18 |
ttcacatggttcaattctaaaaattaaaaacaaattttggactaaattatcagttttgtccatcatagaaactttgctgttattcgttgaaagaaggtnn |
117 |
Q |
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| T |
44000254 |
ttcacatggttcaattctaaaaattaaaaacaaattttggactaaattatcagttttgtccatcatagaaactttgctgttattcgttgaaagaaggtaa |
44000155 |
T |
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| Q |
118 |
nnnnntgtatcagtatcaatattgatgagagtgacacacaaaccggaattatcaatattgatcatagataaattacaaagataattgaaaaatggatata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000154 |
aaaaatgtatcagtatcaatattgatgagagtgacacacaaaccggaattatcaatattgatcatagataaattacaaagataattgaaaaatggatata |
44000055 |
T |
|
| Q |
218 |
acaaatgtagaatcaaaataagagaactgaagtttggaaaccaaccttctattgttgtcttcaaattgaaattggtatgttcagaaacaattggatatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000054 |
acaaatgtagaatcaaaataagagaactgaagtttggaaaccaaccttctattgttgtcttcaaattgaaattggtatgttcagaaacaattggatatat |
43999955 |
T |
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| Q |
318 |
ttctaacttttgcatacttacaaaaatgaagaatgatttcctttc |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43999954 |
ttctaacttttgcatacttacaaaaatgaagaatgatttcctttc |
43999910 |
T |
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