View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7024_low_6 (Length: 344)
Name: NF7024_low_6
Description: NF7024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7024_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 32517575 - 32517902
Alignment:
| Q |
4 |
agatggacatcatcatatacatcaaaagaaagctcaacaagtttcagaggaaatcctttccttcttccctaaattatctttggattaaggaatcttcagc |
103 |
Q |
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| T |
32517575 |
agatggccaccataatatacatcaaaagaaagctcaacaagtttcagaggaaatcctttcctttttccctaaattatctttggattaaggaatcttcagc |
32517674 |
T |
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| Q |
104 |
agttgacactttcagtttataagatttgtcaagatttatttcatcttttcatttatattatgaatttaactttcagtttataagtattatgaatttcgcc |
203 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
32517675 |
agttgacactttcagtttataagttttgtcaagatttacttcattttttcatttatattatgaatttaactttcagtttataagtattatcaatttcacc |
32517774 |
T |
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| Q |
204 |
tatataatataacgtaaattcaggtcctataagacaaatgtgaggaaaatatcagatttcaaaaatgtacagaaatttcgttgatcaaattttagggtat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32517775 |
tatataatataacgtaaattcaggtcctataagacaaatgtgaggaaaatatcagatttcaaaaatgtacagaaatttcgttgatcaaattttagagtat |
32517874 |
T |
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| Q |
304 |
ccaatttaggacatgaaaaggatggaac |
331 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
32517875 |
ccaatctaggacatgaaaaggatggaac |
32517902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 32516158 - 32516255
Alignment:
| Q |
4 |
agatggacatcatcatatacatcaaaagaaagctcaacaagtttcagaggaaatcctttccttcttccctaaattatctttggattaaggaatcttca |
101 |
Q |
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|||||| || || |||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| |||| ||||| | ||||| |||||||||| |
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| T |
32516158 |
agatggtcaccaccatatacatcaagagaaagctcaaattgtttcggaggaaatcctttccttcatccgtaaactatctctagattagggaatcttca |
32516255 |
T |
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