View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7025_high_1 (Length: 763)

Name: NF7025_high_1
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7025_high_1
NF7025_high_1
[»] chr3 (1 HSPs)
chr3 (16-748)||(54216596-54217331)


Alignment Details
Target: chr3 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 16 - 748
Target Start/End: Complemental strand, 54217331 - 54216596
Alignment:
Q  16 aaacaatctgcttacccaagagcaactctaacaatcataagactgtcatcttcataaaagcaagatgcccacccaaattcatactgcaccaaaatgaagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54217331 aaacaatctgcttacccaagagcaactctaacaatcataagactgtcatcttcataaaagcaagatgcccacccaaattcatactgcaccaaaatgaagt 54217232  T
Q  116 gtttttaaggttcaagaagcaaatgcaaaatcataagaagaaaacaatatcaactgaatataacatattacccatgtccaccagaaaaaggtcagctcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54217231 gtttttaaggttcaagaagcaaatgcaaaatcataagaagaaaacaatatcaactgaatataacatattacccatgtccaccagaaaaaggtcagctcaa 54217132  T
Q  216 atgcattctgaacatgtaaagcaaatgatcaaattataagaaatcattctaatattcattgaaaaagactgttttaaatagaagaagaatcaaatacctg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54217131 atgcattctgaacatgtaaagcaaatgatcaaattataagaaatcattctaatattcattgaaaaagactgttttaaatagaagaagaatcaaatacctg 54217032  T
Q  316 aaagaggacataatggaggagataaagaactagttgaggccattcaaaccaaaaatacttgtcagagacttgtacaagaggtatcccctgcactactgca 415  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54217031 aaagaggacataatggaggagataaagaactaattgaggccattcaaaccaaaaatacttgtcagagacttgtacaagaggtatcccctgcactactgca 54216932  T
Q  416 tgtctttcttgtatgtcgagtgccattctagttataattgcttgaagctttgttccaacagctagaatcaccttcaagtaaatcaattattagtcc---n 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  54216931 tgtctttcttgtatgtcgagtgccattctagttataattgcttgaagctttgttccaacagctagaatcaccttcaagtaaatcaattattagtcctttt 54216832  T
Q  513 nnnnnnnnnnnaaacaaacatgtgcatacacacgcatgcgtgcactgtaactagatagatgcttactgctagtggaagaaaagacacccaaaatgaagca 612  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54216831 tttttttttttaaacaaacatgtgcatacacacgcatgcgtgcactgtaactagatagatgcttactgctagtggaagaaaagacacccaaaatgaagca 54216732  T
Q  613 tgccaacctgaaaacaagttatggagacattcacaatcaataagaatttgagtgctacaaaataaaaccaatcgagagttagttaggttaaaatacaaac 712  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54216731 tgccaacctgaaaacaagttatagagatattcacaatcaataagaatttgagtgctacaaaataaaaccaattgagagttagttaggttaaaatacaaac 54216632  T
Q  713 cgtggacatttacaagcaaaaataacaccactgatg 748  Q
    ||||||||||||||||||||||||||||||||||||    
T  54216631 cgtggacatttacaagcaaaaataacaccactgatg 54216596  T

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