View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7025_high_12 (Length: 477)

Name: NF7025_high_12
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7025_high_12
NF7025_high_12
[»] chr6 (3 HSPs)
chr6 (5-458)||(11320750-11321200)
chr6 (393-453)||(25397913-25397973)
chr6 (252-341)||(25398217-25398306)
[»] chr4 (5 HSPs)
chr4 (279-453)||(24857849-24858018)
chr4 (320-451)||(6407936-6408062)
chr4 (395-455)||(22746495-22746555)
chr4 (395-453)||(22748884-22748942)
chr4 (239-453)||(12753645-12753855)
[»] chr1 (4 HSPs)
chr1 (241-453)||(27317601-27317808)
chr1 (388-453)||(145484-145549)
chr1 (279-453)||(3850401-3850570)
chr1 (281-449)||(15552867-15553030)
[»] chr2 (6 HSPs)
chr2 (352-453)||(18845568-18845665)
chr2 (253-431)||(26195346-26195519)
chr2 (350-453)||(16243187-16243286)
chr2 (350-453)||(16423575-16423674)
chr2 (388-454)||(18557638-18557704)
chr2 (394-452)||(18845469-18845527)
[»] chr7 (7 HSPs)
chr7 (239-455)||(42937475-42937685)
chr7 (353-453)||(8049036-8049132)
chr7 (252-345)||(20125314-20125407)
chr7 (200-288)||(34322512-34322600)
chr7 (281-380)||(19203699-19203797)
chr7 (388-454)||(34322347-34322413)
chr7 (387-453)||(34326296-34326362)
[»] chr3 (2 HSPs)
chr3 (388-453)||(15636386-15636451)
chr3 (199-301)||(3170042-3170145)
[»] chr5 (4 HSPs)
chr5 (355-446)||(11713277-11713364)
chr5 (258-375)||(18079940-18080056)
chr5 (239-338)||(29742100-29742198)
chr5 (421-457)||(18080079-18080115)
[»] chr8 (2 HSPs)
chr8 (239-453)||(22274726-22274934)
chr8 (252-437)||(23429595-23429775)


Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 5 - 458
Target Start/End: Complemental strand, 11321200 - 11320750
Alignment:
Q  5 gctatattattctatcgcacttgggtaaaatgtgtagacaatattacatgaagagggagagagactttcccaccttaaagtcatcgcatcctgtagttgg 104  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11321200 gctatataattctatcgcacttgggtaaaatctgtagacaatattacatgaagagggagagagactttcccaccttaaagtcatcacatcctgtagttgg 11321101  T
Q  105 taggtttggaaactacacgtgtatttgaaagaaatataaatagacaaataaattggtaactaaatcttaaaatctaacatactctatattttatttgtta 204  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11321100 taggtttggaaactacacgtgtatttgaaagaaaaataaatagacaaataaattggtaactaaatcttaaaatctaacatactctatattttatttgtta 11321001  T
Q  205 tgaaattaatcaaagtattggcaaatgttgcattgtatagaagaattgagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagt 304  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  11321000 tgaaattaatcaaaatattggcaaatgttgcattgtatagaagaattgagagaaaaggataaaggaagaacaccagagtatattatactactttaaaagt 11320901  T
Q  305 atatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagt 404  Q
    |||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11320900 atatctttaaattgcaatataagtcctatttataggatac---tgaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagt 11320804  T
Q  405 aagtggaaagttaatggatggacatccactaattgatatattcataacattctt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11320803 aagtggaaagttaatggatggacatccactaattgatatattcataacattctt 11320750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 25397973 - 25397913
Alignment:
Q  393 ggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 453  Q
    ||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  25397973 ggagttacaagcatgtggaaggataatggatggacatccactaatagatatattcataaca 25397913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 25398306 - 25398217
Alignment:
Q  252 gagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttatagga 341  Q
    ||||||||||||||| || ||||||  |||||||||| || ||||||| |||| | || ||| |||||||| || |||||||||||||||    
T  25398306 gagagaaaaggataaagggagaacaagagagtatattgtattacttcacaagtgtgtcattacattgtaatgtaggtcctatttatagga 25398217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 453
Target Start/End: Original strand, 24857849 - 24858018
Alignment:
Q  279 agagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgca 378  Q
    |||||||||| || ||||||  |||| || ||||| |||| | ||||| |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||    
T  24857849 agagtatattgtattacttcttaagtgtaactttacattgcattataaatcctatttataggacacaaat-aggtaaatgaataagcacattacaatcca 24857947  T
Q  379 ctcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 453  Q
    || ||| ||     | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24857948 cttactggtg----gaagttacaagtatgtggaaagttaatggatggacatccactaattgatatattcataaca 24858018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 451
Target Start/End: Complemental strand, 6408062 - 6407936
Alignment:
Q  320 aatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaat 419  Q
    |||||| ||||||||||||||| |||||  ||||| |||||||| ||| ||||||| ||||   |||| ||| ||||||||||| | |||||| ||||||    
T  6408062 aatataggtcctatttataggacacaaat-aggtagatgaataaccactttacaatccact---tagt-agtgggagttacaaggatgtggaaggttaat 6407968  T
Q  420 ggatggacatccactaattgatatattcataa 451  Q
     | |||||| |||| ||| |||||||||||||    
T  6407967 tgttggacacccacaaatagatatattcataa 6407936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 22746555 - 22746495
Alignment:
Q  395 agttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacatt 455  Q
    ||||||||| | |||||| | ||||||||||||||||||| || |||||||||||||||||    
T  22746555 agttacaagcatgtggaagggtaatggatggacatccactgatagatatattcataacatt 22746495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 22748942 - 22748884
Alignment:
Q  395 agttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 453  Q
    ||||||||| | ||| || | |||||||||||||||||||||| |||||||||||||||    
T  22748942 agttacaagcatgtgaaagggtaatggatggacatccactaatagatatattcataaca 22748884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 453
Target Start/End: Original strand, 12753645 - 12753855
Alignment:
Q  239 gtatagaagaattgagagaaaaggataagggaagaacacaagagtatattatacta--cttcaaaagtatatctttaaattgtaatataagtcctattta 336  Q
    ||||| |||||| |||||||| |||||| || |||||   |||||||||| || ||  ||||| |||| | || ||| |||||||| || ||||||||||    
T  12753645 gtatataagaatagagagaaa-ggataaagggagaaccagagagtatattgtattatacttcacaagtgtgtcattacattgtaatgtaggtcctattta 12753743  T
Q  337 taggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaa 436  Q
    || || ||| |  ||||| |||||| ||||| ||||||| |||| |||||| ||    ||||||||| | |||||| | | || |||| |||||||||||    
T  12753744 taagacacatat-aggtacatgaatgatcacattacaatccacttactagtgag----agttacaagcatgtggaagggttatagatgaacatccactaa 12753838  T
Q  437 ttgatatattcataaca 453  Q
    |  ||||||||||||||    
T  12753839 tatatatattcataaca 12753855  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 453
Target Start/End: Complemental strand, 27317808 - 27317601
Alignment:
Q  241 atagaagaattgagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttatagg 340  Q
    |||||||| | ||||||| | ||||| || ||||||  |||||||||| || ||||||  |||| | |||||| |||  |||||| ||| ||||||||||    
T  27317808 atagaagagtagagagaacaagataaagggagaacaagagagtatattgtattacttctcaagtgtgtctttacatttcaatataggtcatatttatagg 27317709  T
Q  341 atacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattga 440  Q
    | |||||   ||||||||||||||| | ||||||| ||||  ||| |     ||||||||| ||| |||||| ||||||||||||||||||||||||||     
T  27317708 acacaaatt-ggtaaatgaataatcgcattacaatccacttgctactg----ggagttacatgtatgtggaaggttaatggatggacatccactaattgt 27317614  T
Q  441 tatattcataaca 453  Q
    |||||||||||||    
T  27317613 tatattcataaca 27317601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 145484 - 145549
Alignment:
Q  388 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 453  Q
    |||| ||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  145484 tagtgggagttacaagcatgtggaagggtaatggatggacatccactaatagatatattcataaca 145549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 453
Target Start/End: Original strand, 3850401 - 3850570
Alignment:
Q  279 agagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgca 378  Q
    ||||||||||  | ||||||| |||| | |||||| |||| ||||||  | |||||||||||| |||||  |||||||||||||||||| || |||| ||    
T  3850401 agagtatattgcattacttcataagtgtgtctttatattgcaatatagattctatttataggacacaaat-aggtaaatgaataatcacatttcaatcca 3850499  T
Q  379 ctcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 453  Q
    || ||||||     ||||||||| | | ||||||  ||||||||||| ||||| ||||||  |||||||||||||    
T  3850500 cttactagtg----ggagttacatgcatgtggaagattaatggatggtcatccgctaatttttatattcataaca 3850570  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 449
Target Start/End: Complemental strand, 15553030 - 15552867
Alignment:
Q  281 agtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcact 380  Q
    |||||||| || ||||||| |||| | || ||| |||| |||||| |||||||||||||||||| | | |||||| |  |  ||||| ||||||| ||||    
T  15553030 agtatattgtattacttcacaagtgtgtcattacattgcaatataggtcctatttataggatac-atataggtaactagaagatcacattacaatccact 15552932  T
Q  381 cactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcat 449  Q
    |||    | || ||||||||||  |  ||||| ||||| |||||||||||||||||| | |||||||||    
T  15552931 cac----tggtgggagttacaatcatatggaaggttaagggatggacatccactaataggtatattcat 15552867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 352 - 453
Target Start/End: Complemental strand, 18845665 - 18845568
Alignment:
Q  352 gtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataa 451  Q
    |||||||||||||||| ||||||| |||| ||||||     ||||||||||| | |||||| ||||||| ||||||||||||||||| ||||||||||||    
T  18845665 gtaaatgaataatcacattacaatccacttactagtg----ggagttacaagcatgtggaaggttaatgaatggacatccactaattaatatattcataa 18845570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 431
Target Start/End: Complemental strand, 26195519 - 26195346
Alignment:
Q  253 agagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagagg 352  Q
    |||||||||||||| || ||||||  |||||||||| || ||||||| |||| |    ||| |||| |||||| ||||||||||||||| || | | |||    
T  26195519 agagaaaaggataaagggagaacaagagagtatattgtattacttcataagtgtgatattacattgcaatataggtcctatttataggacac-atatagg 26195421  T
Q  353 taaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatcc 431  Q
    |||||| |  ||||| ||||||| |||||||    |||||||||||||||  |  ||||| ||||| ||||||||||||    
T  26195420 taaatggaagatcacattacaatccactcac----tagtaggagttacaatcatatggaaggttaagggatggacatcc 26195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 453
Target Start/End: Original strand, 16243187 - 16243286
Alignment:
Q  350 aggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcat 449  Q
    ||||||| |||||||||| || |||| |||| ||||||     ||||||||| ||| || ||| ||||||| ||||||||||| ||||| ||||||||||    
T  16243187 aggtaaaagaataatcacatttcaatccacttactagtg----ggagttacatgtatgtagaaggttaatgaatggacatccattaatttatatattcat 16243282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 453
Target Start/End: Complemental strand, 16423674 - 16423575
Alignment:
Q  350 aggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcat 449  Q
    ||||||| |||||||||| || |||| |||| ||||||     |||||| || ||| || ||| ||||||||||||||||||| || || ||||||||||    
T  16423674 aggtaaaagaataatcacatttcaatccacttactagtg----ggagttgcatgtatgtagaaggttaatggatggacatccaatagtttatatattcat 16423579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 18557638 - 18557704
Alignment:
Q  388 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacat 454  Q
    |||| ||||||| ||||| |||||| |||||  | || |||||||||| ||||||||||||||||||    
T  18557638 tagtgggagttataagtatgtggaaggttaaaagttgaacatccactacttgatatattcataacat 18557704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 18845469 - 18845527
Alignment:
Q  394 gagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataac 452  Q
    |||||||||||   ||||| ||||||  ||| |||||||||||||||||||||||||||    
T  18845469 gagttacaagtctatggaaggttaataaatgaacatccactaattgatatattcataac 18845527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 455
Target Start/End: Complemental strand, 42937685 - 42937475
Alignment:
Q  239 gtatagaagaattgagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttata 338  Q
    ||||| |||||| |||||||| |||||| |||||||||  |||||||||| || |||||||||||| | || ||| |||||||| |  ||||||||||||    
T  42937685 gtatataagaatagagagaaa-ggataaaggaagaacaagagagtatattgtattacttcaaaagtgtgtcattacattgtaatgttggtcctatttata 42937587  T
Q  339 ggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaatt 438  Q
    ||| || | | ||||| |||||| ||||| ||||||  |||| ||    |||| | ||||||||| |  ||||| | | || |||||||||||||||||     
T  42937586 ggacac-atataggtacatgaatgatcacattacaacccacttac----tagtggaagttacaagcatctggaagggttatagatggacatccactaata 42937492  T
Q  439 gatatattcataacatt 455  Q
     ||||||||||||||||    
T  42937491 tatatattcataacatt 42937475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 453
Target Start/End: Original strand, 8049036 - 8049132
Alignment:
Q  353 taaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataac 452  Q
    |||||||||||| || ||||||| ||||||||||| ||    ||||| ||||| |||||| ||||||| ||| ||||  || ||||||||||||||||||    
T  8049036 taaatgaataatgacattacaattcactcactagtgag----agttataagtatgtggaaggttaatgaatgaacatttacaaattgatatattcataac 8049131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 20125407 - 20125314
Alignment:
Q  252 gagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggataca 345  Q
    |||||||||||||||  | ||||||  || ||||||| || ||||||| |||| | || ||| |||| |||||| |||||||||||||||||||    
T  20125407 gagagaaaaggataaatggagaacaagagggtatattgtattacttcacaagtgtgtcattacattgcaatatatgtcctatttataggataca 20125314  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 34322600 - 34322512
Alignment:
Q  200 tgttatgaaattaatcaaagtattggcaaatgttgcattgtatagaagaattgagagaaaaggataagggaagaacacaagagtatatt 288  Q
    ||||||||||||||  ||||||||  |||| |||||||||||||||| | | ||||||||  |||||||| |||| |  ||||||||||    
T  34322600 tgttatgaaattaacaaaagtattatcaaaagttgcattgtatagaatagtagagagaaagagataaggggagaataagagagtatatt 34322512  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 380
Target Start/End: Original strand, 19203699 - 19203797
Alignment:
Q  281 agtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcact 380  Q
    |||||||| || | ||||| |||| | |||||| |||||||||||  |||| ||||| ||| |||||  |||||||||||||||||| ||||||| ||||    
T  19203699 agtatattgtatttcttcacaagtgtgtctttatattgtaatatagatcctgtttattggacacaaat-aggtaaatgaataatcacattacaatccact 19203797  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 34322413 - 34322347
Alignment:
Q  388 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacat 454  Q
    |||| ||||||||||| | |||||||| | || ||| |||||||||||||  |||||||||||||||    
T  34322413 tagtgggagttacaagcatgtggaaaggttatagatagacatccactaatatatatattcataacat 34322347  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 34326362 - 34326296
Alignment:
Q  387 ttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 453  Q
    ||||| ||||||||||| | |||||| | | || |||||||||||||||||  ||||||||||||||    
T  34326362 ttagtgggagttacaagcatgtggaagggttatagatggacatccactaatatatatattcataaca 34326296  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 15636386 - 15636451
Alignment:
Q  388 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 453  Q
    |||| ||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||||||||    
T  15636386 tagtgggagttacaagtatgtggaggggtaatggatggacatccactaattgatataatcataaca 15636451  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 3170042 - 3170145
Alignment:
Q  199 ttgttatgaaattaatcaaa-gtattggcaaatgttgcattgtatagaagaattgagagaaaaggataagggaagaacacaagagtatattatactactt 297  Q
    |||||||||||||||||||| |||||  |||| |||| ||||||||||||| | ||||||||  ||||| || |||| |  ||||||||||  | |||||    
T  3170042 ttgttatgaaattaatcaaaggtattatcaaaagttgtattgtatagaagagtagagagaaagagataaagggagaagaagagagtatattgcattactt 3170141  T
Q  298 caaa 301  Q
    ||||    
T  3170142 caaa 3170145  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 11713364 - 11713277
Alignment:
Q  355 aatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatatt 446  Q
    ||||||||||||| ||| ||| ||||||    ||||| ||||||| |||||  ||||| |||||| ||||||||||||||||||||||||||    
T  11713364 aatgaataatcacattagaatccactca----ttagtgggagttataagtatctggaaggttaatagatggacatccactaattgatatatt 11713277  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 18079940 - 18080056
Alignment:
Q  258 aaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaat 357  Q
    ||||||||| || ||||||  |||||||||| || ||||||| |||| | || ||| |||||||| || ||||||||||||||| || | | ||||| ||    
T  18079940 aaaggataaagggagaacaagagagtatattgtattacttcacaagtgtgtcattacattgtaatgtaggtcctatttataggacac-atataggtacat 18080038  T
Q  358 gaataatcacgttacaat 375  Q
    |||| ||||| |||||||    
T  18080039 gaatgatcacattacaat 18080056  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 29742100 - 29742198
Alignment:
Q  239 gtatagaagaattgagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttata 338  Q
    ||||| |||||| |||||||| |||||| || |||||| ||||||||||| || ||||||| |||| | || ||| ||| |||| || ||||||||||||    
T  29742100 gtatataagaatagagagaaa-ggataaagggagaacaaaagagtatattgtattacttcacaagtgtgtcattacattttaatgtaggtcctatttata 29742198  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 18080079 - 18080115
Alignment:
Q  421 gatggacatccactaattgatatattcataacattct 457  Q
    |||||||||||||||||  ||||||||||||||||||    
T  18080079 gatggacatccactaatatatatattcataacattct 18080115  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 453
Target Start/End: Complemental strand, 22274934 - 22274726
Alignment:
Q  239 gtatagaagaattgagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttata 338  Q
    ||||| |||||| |||||||| |||||| || ||||||  |||||||||| || ||||||| | |||| |  ||| |||||||| || ||||||||||||    
T  22274934 gtatataagaatagagagaaa-ggataaagggagaacaggagagtatattgtattacttcacatgtatgttattacattgtaatgtaggtcctatttata 22274836  T
Q  339 ggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaatt 438  Q
    | | | || | ||||| |||||| ||||| ||| ||  |||| ||||||     ||||||||||| | |||||| | | || |||||||||||||||||     
T  22274835 gaaca-aatataggtacatgaatgatcacattagaacccacttactagtg----ggagttacaagcatgtggaaggattatagatggacatccactaata 22274741  T
Q  439 gatatattcataaca 453  Q
     ||||||||||||||    
T  22274740 tatatattcataaca 22274726  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 437
Target Start/End: Complemental strand, 23429775 - 23429595
Alignment:
Q  252 gagagaaaaggataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagag 351  Q
    ||||||| ||||||| || ||||||  |||||||||| |  ||||||| |||| | || ||| |||||||| || ||||||||||||||| || | | ||    
T  23429775 gagagaagaggataaagggagaacaagagagtatattgttttacttcacaagtgtgtcattacattgtaatgtaggtcctatttataggacac-atatag 23429677  T
Q  352 gtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaat 437  Q
    ||| |||||| ||||| ||||||  |||| ||    |||| ||||||| ||| | |||||| | | || |||||||||||||||||    
T  23429676 gtacatgaatgatcacattacaacccacttac----tagtgggagttagaagcatgtggaagggttatagatggacatccactaat 23429595  T

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