View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_high_21 (Length: 366)
Name: NF7025_high_21
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 18101662 - 18101483
Alignment:
| Q |
18 |
atcattatccaaaaagaatataaaaacagagacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttaaaacaaggtaa |
117 |
Q |
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| T |
18101662 |
atcattatccaaaaagaatataaaaacaaagacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttcaaacaaggtaa |
18101563 |
T |
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| Q |
118 |
tgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
197 |
Q |
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| T |
18101562 |
tgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
18101483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 231 - 360
Target Start/End: Complemental strand, 18101450 - 18101321
Alignment:
| Q |
231 |
ggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattatta |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18101450 |
ggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattatta |
18101351 |
T |
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| Q |
331 |
cccaatccaatttatgtactaacaccaaac |
360 |
Q |
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| T |
18101350 |
cccaatccaatttatgtactaacaccaaac |
18101321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 37859270 - 37859091
Alignment:
| Q |
18 |
atcattatccaaaaagaatataaaaacagagacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttaaaacaaggtaa |
117 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37859270 |
atcattatccaaaaagaatataaaaacaaagacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttcaaacaaggtaa |
37859171 |
T |
|
| Q |
118 |
tgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859170 |
tgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
37859091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 231 - 360
Target Start/End: Complemental strand, 37859058 - 37858929
Alignment:
| Q |
231 |
ggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattatta |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37859058 |
ggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattatta |
37858959 |
T |
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| Q |
331 |
cccaatccaatttatgtactaacaccaaac |
360 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37858958 |
cccaatccaatttatgtactaacaccaaac |
37858929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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