View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_high_31 (Length: 279)
Name: NF7025_high_31
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 39470417 - 39470159
Alignment:
| Q |
12 |
ctgtggagaaccttgatctctctcagaagaatctcagtggtatagtatccggtgatatacaaagacttcaaaatcttacttctcttaacttatgttgcaa |
111 |
Q |
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| T |
39470417 |
ctgtggagaaccttgatctctctcacaagaatctcagtggtatagtatccggtgatatacaaagacttcaaaatcttacttctcttaacttatgttgcaa |
39470318 |
T |
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| Q |
112 |
tgcattttcatcaccatttccaaaatttatatccaatctcaccacattgaaaagtcttgatgtaagtcagaatttcttcattggtgaatttccattagga |
211 |
Q |
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| T |
39470317 |
tgcattttcatcaccatttccaaaatttatatccaatctcaccacattgaaaagtcttgatgtaagtcagaatttcttcattggtgaatttccattagga |
39470218 |
T |
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| Q |
212 |
cttggaaaggcgtcaggacttacaacattaaatgcatcaagtaatgagttcacaggttc |
270 |
Q |
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| T |
39470217 |
cttggaaaggcgtcgggacttacaacattaaatgcatcaagtaatgagttcacaggttc |
39470159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 44262386 - 44262275
Alignment:
| Q |
18 |
agaaccttgatctctctcagaagaatctcagtggtatagtatccggtgatatacaaagacttcaaaatcttacttctcttaacttatgttgcaatgcatt |
117 |
Q |
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|||| |||||||||||||| ||||||||||||||| | ||||| ||||||| ||| |||| ||| ||| || ||||||| ||| |||||||| | || |
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| T |
44262386 |
agaagcttgatctctctcacaagaatctcagtggttcaatatccaatgatatagaaacactttaaagtctaacctctcttagcttctgttgcaacacttt |
44262287 |
T |
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| Q |
118 |
ttcatcaccatt |
129 |
Q |
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| T |
44262286 |
ttcatcaccatt |
44262275 |
T |
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