View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_high_34 (Length: 269)
Name: NF7025_high_34
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 9877300 - 9877538
Alignment:
| Q |
13 |
aatattcgtgagcttagcaccataaccgtttcttccaccagtagttttcttcacattatcgtcataattactactcgtaagaagatgaccgaaaatcaac |
112 |
Q |
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| T |
9877300 |
aatattcgtgagcttagcaccataaccgtttcttccaccagtagttttcttcacattatcgtcataattactactcgtaagaagatgaccaaaaatcaac |
9877399 |
T |
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| Q |
113 |
tccggaacataaaccttctcttcttgatgaatctcaaccggaacaccgtcaccgttattgtaaacagaaaccgtattcgcctcaggatcgatcgttactt |
212 |
Q |
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| T |
9877400 |
tccggaacataaaccttctcttcttgatgaatctcaaccggaacaccgtcaccgttattgtaaacagaaaccgtattcgcctcaggatcgatcgttactt |
9877499 |
T |
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| Q |
213 |
tcaacgaatccatggatggatctcgctgtttgttatcag |
251 |
Q |
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| T |
9877500 |
tcaacgaatccatggatggatctcgctgtttgttatcag |
9877538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 38841231 - 38841442
Alignment:
| Q |
13 |
aatattcgtgagcttagcaccataaccgtttcttccaccagtagttttcttcacattatcgtcataattactactcgtaagaagatgaccgaaaatcaac |
112 |
Q |
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| T |
38841231 |
aatattggtgagcttagcaccataaccatttctcccaccagtagttttcttcacattataatcatagtt------------aaggtgaccaaagaacaat |
38841318 |
T |
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| Q |
113 |
tccggaacataaaccttctcttcttgatgaatctcaaccggaacaccgtcaccgttattgtaaacagaaaccgtattcgcctcaggatcgatcgttactt |
212 |
Q |
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| T |
38841319 |
tcaggaacataaacattctcttccttatgaagccctactggaacaccttcaccattattataaactgaaactgtattcccttccggttcgattgtaactt |
38841418 |
T |
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| Q |
213 |
tcaacgaatccatggatggatctc |
236 |
Q |
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| T |
38841419 |
tgagcgaatccatggacggatctc |
38841442 |
T |
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