View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_high_35 (Length: 258)
Name: NF7025_high_35
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 34779471 - 34779255
Alignment:
| Q |
21 |
atcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaaaatttcaaagggctgtgttctctgatgcgatataaatggctaacttaa |
120 |
Q |
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| T |
34779471 |
atcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaaaatttcaaagggccgtgttctctgatgcgatataaatggttaacttaa |
34779372 |
T |
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| Q |
121 |
tcacatgcacttacaacacatttggtaaatatttcctattccaccatgcatgtttataatatctaatttcttttggagtctatactgcataattatgtta |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34779371 |
tcacatgcacttacaacacatttggtaaatatttcctattccaccatgcatgtttataatatctaatttcttttggagtctgtactgcataattatgtta |
34779272 |
T |
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| Q |
221 |
attgttacactatgttg |
237 |
Q |
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||||||||| ||||||| |
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| T |
34779271 |
attgttacagtatgttg |
34779255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 34682910 - 34682979
Alignment:
| Q |
25 |
aacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaaaatttcaaagggctgtgttctc |
94 |
Q |
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|||| ||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
34682910 |
aacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaaaatttcaaagggctgtgttctc |
34682979 |
T |
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