View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7025_high_36 (Length: 247)

Name: NF7025_high_36
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7025_high_36
NF7025_high_36
[»] chr1 (16 HSPs)
chr1 (19-247)||(10162734-10162962)
chr1 (160-247)||(10163585-10163672)
chr1 (24-131)||(21087712-21087820)
chr1 (27-133)||(11670937-11671044)
chr1 (14-133)||(3448934-3449054)
chr1 (27-126)||(11672545-11672645)
chr1 (24-92)||(13993656-13993724)
chr1 (24-131)||(20771116-20771223)
chr1 (24-133)||(29292645-29292755)
chr1 (24-121)||(36817250-36817348)
chr1 (28-121)||(36814105-36814199)
chr1 (25-125)||(35238889-35238990)
chr1 (19-133)||(12180792-12180908)
chr1 (19-74)||(10833515-10833570)
chr1 (19-93)||(4033073-4033147)
chr1 (18-102)||(12181361-12181445)
[»] chr7 (8 HSPs)
chr7 (14-133)||(30879409-30879528)
chr7 (19-135)||(41397654-41397775)
chr7 (24-133)||(48572669-48572779)
chr7 (19-82)||(22130460-22130523)
chr7 (19-82)||(40500583-40500646)
chr7 (24-109)||(22112194-22112279)
chr7 (24-109)||(40494172-40494257)
chr7 (24-77)||(46949997-46950050)
[»] chr4 (7 HSPs)
chr4 (165-241)||(1609738-1609814)
chr4 (14-133)||(3071597-3071717)
chr4 (19-110)||(22497840-22497931)
chr4 (19-133)||(49058298-49058413)
chr4 (19-126)||(36761841-36761949)
chr4 (27-126)||(42430842-42430942)
chr4 (24-110)||(40603983-40604069)
[»] chr5 (5 HSPs)
chr5 (19-133)||(13858172-13858291)
chr5 (27-124)||(11664650-11664748)
chr5 (19-133)||(13860114-13860233)
chr5 (19-133)||(6454340-6454455)
chr5 (19-74)||(90773-90828)
[»] chr8 (7 HSPs)
chr8 (19-131)||(38064333-38064446)
chr8 (26-110)||(39544796-39544880)
chr8 (24-126)||(13013444-13013547)
chr8 (24-126)||(7305478-7305581)
chr8 (168-234)||(37722203-37722269)
chr8 (24-119)||(26228581-26228677)
chr8 (24-126)||(13014704-13014807)
[»] chr3 (4 HSPs)
chr3 (19-92)||(3964763-3964836)
chr3 (18-126)||(49089594-49089703)
chr3 (29-92)||(34618846-34618909)
chr3 (19-93)||(3956784-3956858)
[»] chr2 (2 HSPs)
chr2 (19-74)||(29171446-29171501)
chr2 (59-133)||(35549716-35549791)
[»] chr6 (2 HSPs)
chr6 (19-71)||(7300672-7300724)
chr6 (19-74)||(7300277-7300332)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 10162962 - 10162734
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataaatagctagc 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  10162962 acttctcttaatatatttaaaacaaccaacatcaaattagattgatagaaatatgaaggtaaaaagaagttaaggatgaaataaccaataaatagctagc 10162863  T
Q  119 attgaaatagaactttcgtcaagatctatgatcatcattaccacaacaactatctagtaatatgagcgatgaaagaatccatttccatacgagagactcc 218  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  10162862 attgaaatagaactttcgtcaagatttatgatcatcatttacacaacaactatctagtaatatgagcgataaaagaatccatttcaatacgagagactcc 10162763  T
Q  219 accttcatccattgacgtaccaacaacat 247  Q
    |||||||||||||||||||||||||||||    
T  10162762 accttcatccattgacgtaccaacaacat 10162734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 10163672 - 10163585
Alignment:
Q  160 cacaacaactatctagtaatatgagcgatgaaagaatccatttccatacgagagactccaccttcatccattgacgtaccaacaacat 247  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  10163672 cacagcaaatatctagtaatatgagcaatgaaagaatccatttccatacgagaaactcctccttcatccattgacgtactaacaacat 10163585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 21087820 - 21087712
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattg 122  Q
    |||||||||||||| ||||||| | ||| | |||||||||||| ||| | ||||||||||||| ||||| || ||||||| ||| |||||||||||||||    
T  21087820 tcttaatatatttagaacaaccgaaatcgaattagattgataggaatctaaaggcaaaaagaatttaagtattaaataaccaataaaatagctagcattg 21087721  T
Q  123 aaatagaac 131  Q
    |||| ||||    
T  21087720 aaatcgaac 21087712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 11670937 - 11671044
Alignment:
Q  27 taatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattgaaa 125  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||| |||| ||||||||||||||| | |||| | ||||||| ||| |||||| |||||||||||    
T  11670937 taatatatttagaacaaccgacaacaaattacattgataaaaatctgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttagcattgaaa 11671036  T
Q  126 tagaactt 133  Q
    | ||||||    
T  11671037 tcgaactt 11671044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 3448934 - 3449054
Alignment:
Q  14 acatcacttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaata 112  Q
    |||| |||| |||||||||||||| ||||||| | ||  | ||| |||||||| ||| |||||||||||| || |||||| | ||||||||||| |||||    
T  3448934 acattacttgtcttaatatatttagaacaaccgatattgaattacattgataggaatctgaaggcaaaaataatttaaggttcaaataactaataaaata 3449033  T
Q  113 gctagcattgaaatagaactt 133  Q
    | ||||||||| || ||||||    
T  3449034 gttagcattgagatcgaactt 3449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 11672545 - 11672645
Alignment:
Q  27 taatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattgaaa 125  Q
    ||||||||| | ||||||| ||||| | |||||||||| ||||| ||||||||||||||| | |||| | ||||||| ||| |||||| |||||||||||    
T  11672545 taatatattcagaacaaccgacatcgaattagattgatcgaaatctgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttagcattgaaa 11672644  T
Q  126 t 126  Q
    |    
T  11672645 t 11672645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 13993656 - 13993724
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaag 92  Q
    |||||||||||||  ||||||| ||||||| ||||||| |||||||| ||||||||||||||| |||||    
T  13993656 tcttaatatatttctaacaaccgacatcaaattagatttatagaaatttgaaggcaaaaagaatttaag 13993724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 20771223 - 20771116
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataa-atagctagcattg 122  Q
    |||||||||||| | ||||||| | ||| | |||||||||||| ||| | ||||||||||||| ||||| || ||||||| ||||| |||||||||||||    
T  20771223 tcttaatatatt-agaacaaccgaaatcgaattagattgataggaatctaaaggcaaaaagaatttaagtattaaataaccaataagatagctagcattg 20771125  T
Q  123 aaatagaac 131  Q
    |||| ||||    
T  20771124 aaatcgaac 20771116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 29292755 - 29292645
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattg 122  Q
    |||||||||||||| ||||||| || || | || |||||||||||||  ||||| |||||||| |||||| | ||||||| ||| ||||| ||| |||||    
T  29292755 tcttaatatatttagaacaaccgacgtctaattcgattgatagaaatcagaaggtaaaaagaatttaaggttcaaataaccaataaaatacctaacattg 29292656  T
Q  123 aaatagaactt 133  Q
    |||| ||||||    
T  29292655 aaatcgaactt 29292645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 36817348 - 36817250
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcatt 121  Q
    |||||||||||||| ||||||| ||||  | ||||||| |||| ||| |||| ||||||||||||||| | | ||||||| ||| ||||||||||||||    
T  36817348 tcttaatatatttagaacaaccgacattgaattagattaataggaatttgaatgcaaaaagaaattaatgttcaaataaccaataaaatagctagcatt 36817250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 36814199 - 36814105
Alignment:
Q  28 aatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcatt 121  Q
    |||||||||| ||||||| ||||  | ||||||| |||| ||| ||||||||||||||| |||| | | ||||||| ||| ||||||||||||||    
T  36814199 aatatatttagaacaaccgacattgaattagattaataggaatctgaaggcaaaaagaatttaaagttcaaataaccaataaaatagctagcatt 36814105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 35238889 - 35238990
Alignment:
Q  25 cttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattga 123  Q
    ||||||||||||| ||||||| || |||| || ||||||||| |||  |||| |||||| || |||||| | |||||| |||| ||||| ||||||||||    
T  35238889 cttaatatatttagaacaaccgacgtcaaattcgattgataggaatcagaagacaaaaaaaatttaaggttcaaataattaataaaatacctagcattga 35238988  T
Q  124 aa 125  Q
    ||    
T  35238989 aa 35238990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 12180792 - 12180908
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggc-aaaaagaaattaaggatgaaataactaat-aaatagcta 116  Q
    |||| |||||||||||||| ||||||| ||||| | |||||||||||| |||   ||||| |||||||| |||||| | ||||||  ||| |||| ||||    
T  12180792 acttgtcttaatatatttagaacaaccgacatcgaattagattgataggaatccaaaggcaaaaaagaatttaaggttcaaataaacaataaaatggcta 12180891  T
Q  117 gcattgaaatagaactt 133  Q
     ||||||||| ||||||    
T  12180892 acattgaaattgaactt 12180908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 10833570 - 10833515
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatga 74  Q
    |||| ||||||||||||||||||||| |||||| | |||||||||||  |||||||    
T  10833570 acttgtcttaatatatttaaaacaactaacatcgaattagattgataagaatatga 10833515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 4033073 - 4033147
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaagg 93  Q
    |||| |||||||||||||| || |||| ||||| | ||| |||||||  ||| ||||||||||||||| ||||||    
T  4033073 acttgtcttaatatatttagaataaccgacatcgaattaaattgatatgaatctgaaggcaaaaagaatttaagg 4033147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 12181361 - 12181445
Alignment:
Q  18 cacttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataa 102  Q
    ||||| |||||||||||||| ||||||||| ||  | |||||| ||||  ||| ||||||||| ||||| |||||| | ||||||    
T  12181361 cacttgtcttaatatatttagaacaaccaaaattgaattagatcgatacgaatctgaaggcaacaagaatttaaggttcaaataa 12181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 30879409 - 30879528
Alignment:
Q  14 acatcacttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataaatag 113  Q
    |||| |||| |||||||||||||| ||||||| || | || |||||||||||  ||| ||||||||||||||| |||||| | ||||||| |||||||||    
T  30879409 acattacttgtcttaatatatttagaacaaccgactttaaattagattgataacaatttgaaggcaaaaagaatttaaggtttaaataaccaataaatag 30879508  T
Q  114 ctagcattgaaatagaactt 133  Q
    ||||||||||||| ||||||    
T  30879509 ctagcattgaaatcgaactt 30879528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 41397654 - 41397775
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatg----aaataactaat-aaatag 113  Q
    |||| |||||||||||||| ||||||| ||||| | |||||||||||| ||| ||||||||||||||| ||||| |||    |  |||| ||| ||||||    
T  41397654 acttgtcttaatatatttagaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcatgtaaccaataaaatag 41397753  T
Q  114 ctagcattgaaatagaactttc 135  Q
    ||||||||||||| ||||||||    
T  41397754 ctagcattgaaatcgaactttc 41397775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 48572669 - 48572779
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattg 122  Q
    |||||||||||||| |||||||  |||||| |||||||||||| |||  |||| |||||| || |||||| | ||||||| ||| |||||| |||||||     
T  48572669 tcttaatatatttagaacaaccggcatcaaattagattgataggaatcagaagacaaaaaaaatttaaggttcaaataaccaataaaatagttagcatta 48572768  T
Q  123 aaatagaactt 133  Q
    |||| ||||||    
T  48572769 aaattgaactt 48572779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 22130460 - 22130523
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaa 82  Q
    |||| ||||||||||||| |||||||| ||||| | |||||||||||| ||| |||| ||||||    
T  22130460 acttgtcttaatatatttcaaacaaccgacatcgaattagattgataggaatctgaatgcaaaa 22130523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 40500646 - 40500583
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaa 82  Q
    |||| ||||||||||||| |||||||| ||||| | |||||||||||| ||| |||| ||||||    
T  40500646 acttgtcttaatatatttcaaacaaccgacatcgaattagattgataggaatctgaatgcaaaa 40500583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 22112194 - 22112279
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataa 109  Q
    |||||||||||||| ||||||| ||||| | ||||||| |||  ||| | |||| |||||||| |||||| | ||||||| |||||    
T  22112194 tcttaatatatttagaacaaccgacatcgaattagattaatatgaatctaaaggtaaaaagaatttaaggttcaaataacaaataa 22112279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 40494257 - 40494172
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataa 109  Q
    |||||||||||||| ||||||| ||||| | ||||||| |||  ||| | |||| |||||||| |||||| | ||||||| |||||    
T  40494257 tcttaatatatttagaacaaccgacatcgaattagattaatatgaatctaaaggtaaaaagaatttaaggttcaaataacaaataa 40494172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 46950050 - 46949997
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaagg 77  Q
    |||||||||||||  |||| | |||||||| ||||||| |||||||||||||||    
T  46950050 tcttaatatattttcaacatcgaacatcaaattagattaatagaaatatgaagg 46949997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 1609814 - 1609738
Alignment:
Q  165 caactatctagtaatatgagcgatgaaagaatccatttccatacgagagactccaccttcatccattgacgtaccaa 241  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||    
T  1609814 caactatctagtgatatgagcgatgaaagaatccatttccatacgagaaactccgccttcatccatcgacataccaa 1609738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 3071597 - 3071717
Alignment:
Q  14 acatcacttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaata 112  Q
    |||| |||| |||||||||||||| | ||| | ||||||| |||||||||||| ||| | ||||||||||||| | || | | ||||||| ||| |||||    
T  3071597 acattacttgtcttaatatatttagagcaatcgacatcaaattagattgataggaatctaaaggcaaaaagaattaaaagttcaaataaccaataaaata 3071696  T
Q  113 gctagcattgaaatagaactt 133  Q
    |||||||||||||| ||||||    
T  3071697 gctagcattgaaattgaactt 3071717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 22497840 - 22497931
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataaa 110  Q
    |||| |||||||||||||| ||||||  ||||| |  ||||||||||||||| ||||||||||||||| | |||| | ||||||| ||||||    
T  22497840 acttgtcttaatatatttagaacaactgacatcgaactagattgatagaaatttgaaggcaaaaagaattcaaggttcaaataaccaataaa 22497931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 49058413 - 49058298
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctag 117  Q
    |||| |||||||||||||| ||||||  ||||| | ||||||||| | | || ||||||||||||||| |||| | | ||||||| ||| |||||||||     
T  49058413 acttgtcttaatatatttagaacaactgacatcgaattagattgacaaatatctgaaggcaaaaagaatttaatgttaaaataaccaataaaatagctaa 49058314  T
Q  118 cattgaaatagaactt 133  Q
    |||| |||| ||||||    
T  49058313 cattaaaatcgaactt 49058298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 36761949 - 36761841
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataaa-tagctag 117  Q
    |||| |||||||||| ||| ||||||| | ||| | || ||||||||| ||| |||| |||||||||| ||||   | ||||||| |||||| |||||||    
T  36761949 acttatcttaatataattagaacaaccgatatcgaattcgattgataggaatctgaacgcaaaaagaatttaaatttcaaataaccaataaaatagctag 36761850  T
Q  118 cattgaaat 126  Q
    |||||||||    
T  36761849 cattgaaat 36761841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 42430942 - 42430842
Alignment:
Q  27 taatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattgaaa 125  Q
    ||||||||||| ||||||| | ||| | |||||||||||||||| |||||||| |||||| | |||| | ||||||  ||| |||||  |||||||||||    
T  42430942 taatatatttagaacaaccgaaatcgaattagattgatagaaatctgaaggcacaaagaattcaaggttcaaataatcaataaaataattagcattgaaa 42430843  T
Q  126 t 126  Q
    |    
T  42430842 t 42430842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 40604069 - 40603983
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataaa 110  Q
    |||||||||||||| ||||||| ||||| |  | ||||||||| ||| |||||  |||||||| |||||| | ||||||| ||||||    
T  40604069 tcttaatatatttagaacaaccgacatcgaaatcgattgatagtaatttgaagataaaaagaatttaaggtttaaataaccaataaa 40603983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 13858172 - 13858291
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatg----aaataactaat-aaatag 113  Q
    |||| |||||||||||||||||||||| ||||| | |||||||||||| ||| ||||||||||||||| ||||| |||    ||||||||| | ||||||    
T  13858172 acttgtcttaatatatttaaaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcaaataactagtaaaatag 13858271  T
Q  114 ctagcattgaaatagaactt 133  Q
    ||||||||||||| ||||||    
T  13858272 ctagcattgaaatcgaactt 13858291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 11664650 - 11664748
Alignment:
Q  27 taatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattgaa 124  Q
    ||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||| ||| | |||| | ||||||| ||| |||||| ||||||||||    
T  11664650 taatatatttaaaacaaccgacatcgaattagattgatagaaatctgaaggcaaaaggaattcaaggttcaaataaccaataaaatagttagcattgaa 11664748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 13860233 - 13860114
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatg----aaataactaat-aaatag 113  Q
    |||| |||||||||||||| ||||||| ||||| | |||||||||||| ||| ||||||||||||||| ||||| |||    ||||||||||| ||||||    
T  13860233 acttgtcttaatatatttagaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcaaataactaataaaatag 13860134  T
Q  114 ctagcattgaaatagaactt 133  Q
    ||| || |||||| ||||||    
T  13860133 ctaacactgaaatcgaactt 13860114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 6454340 - 6454455
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctag 117  Q
    |||| |||||||||||||| ||||||| || || | || ||||||||| ||| ||||||||||||||| |||||| | ||||||| ||| ||||  ||||    
T  6454340 acttgtcttaatatatttagaacaaccgacctcgaattcgattgataggaatctgaaggcaaaaagaatttaaggttcaaataaccaataaaattcctag 6454439  T
Q  118 cattgaaatagaactt 133  Q
    ||||||||| ||||||    
T  6454440 cattgaaatcgaactt 6454455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 90773 - 90828
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatga 74  Q
    |||| |||||||||||||||||||||||||||  | ||||| ||||| ||||||||    
T  90773 acttgtcttaatatatttaaaacaaccaacattgaattagagtgatataaatatga 90828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 38064333 - 38064446
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctag 117  Q
    |||| |||||||||||||||||||||| ||||| | ||||||| |||| |||||||| |||||||||| |||||| | ||||||| ||| |||| | |||    
T  38064333 acttgtcttaatatatttaaaacaaccgacatcgaattagattaataggaatatgaaagcaaaaagaagttaaggttaaaataaccaataaaattgttag 38064432  T
Q  118 cattgaaatagaac 131  Q
    ||||||||| ||||    
T  38064433 cattgaaatcgaac 38064446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 39544880 - 39544796
Alignment:
Q  26 ttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaataaa 110  Q
    |||||||||||| ||||||| ||||||| |||||||||||  ||| |||||| |||||||| |||||| | ||||||| ||||||    
T  39544880 ttaatatatttagaacaaccgacatcaaattagattgataagaatctgaaggtaaaaagaatttaaggttcaaataaccaataaa 39544796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 13013444 - 13013547
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattg 122  Q
    |||||||||||||| ||||||| ||||||| ||| |||||||| ||| |||||  |||||||| |||||| | ||||||| ||| ||||  |||||||||    
T  13013444 tcttaatatatttagaacaaccgacatcaaattaaattgataggaatctgaagataaaaagaatttaaggttcaaataacgaataaaattactagcattg 13013543  T
Q  123 aaat 126  Q
    ||||    
T  13013544 aaat 13013547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 7305478 - 7305581
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattg 122  Q
    |||||||||||||| ||||||| | ||| | || ||||||||| ||| ||||| ||||| ||| |||||| | ||||||| ||| ||||| |||||||||    
T  7305478 tcttaatatatttataacaaccgatatcgaattcgattgataggaatctgaagacaaaaggaatttaaggttcaaataaccaataaaatatctagcattg 7305577  T
Q  123 aaat 126  Q
    ||||    
T  7305578 aaat 7305581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 37722269 - 37722203
Alignment:
Q  168 ctatctagtaatatgagcgatgaaagaatccatttccatacgagagactccaccttcatccattgac 234  Q
    ||||||||| | ||| || ||||||||||||| ||||||||| || || ||||||||||||||||||    
T  37722269 ctatctagtcacatgggcaatgaaagaatccagttccatacgtgaaacaccaccttcatccattgac 37722203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 26228677 - 26228581
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaata-aatagctagca 119  Q
    |||||| ||||||| ||||||||||||| | |||||||||||  ||| ||||||||||| ||| |||| |   ||||||| |||| |||||||||||    
T  26228677 tcttaacatatttagaacaaccaacatcgaattagattgataagaatttgaaggcaaaacgaatttaatgtccaaataacaaatagaatagctagca 26228581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 13014704 - 13014807
Alignment:
Q  24 tcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattg 122  Q
    |||||||||||||| ||||||||| ||| | |||||||| ||  ||| |||| |||||||||| | |||| | ||||||  | | |||||||||||||||    
T  13014704 tcttaatatatttagaacaaccaaaatcgaattagattgttaagaatctgaaagcaaaaagaattcaaggttcaaataatcattaaaatagctagcattg 13014803  T
Q  123 aaat 126  Q
    ||||    
T  13014804 aaat 13014807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 3964836 - 3964763
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaag 92  Q
    |||| |||||||||||||  ||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||    
T  3964836 acttgtcttaatatatttccaacaaccgacatcaagttagattaatagaaatttgaaggcaaaaagaatttaag 3964763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 49089703 - 49089594
Alignment:
Q  18 cacttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagcta 116  Q
    ||||| |||||||||||||| ||||||| ||||  | |||||||||||| ||| | ||||||||||||| |||||  | ||||||| ||| |||||||||    
T  49089703 cacttgtcttaatatatttagaacaaccgacattgaattagattgataggaatcttaaggcaaaaagaatttaagagtcaaataaccaataaaatagcta 49089604  T
Q  117 gcattgaaat 126  Q
    ||||||||||    
T  49089603 gcattgaaat 49089594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 34618846 - 34618909
Alignment:
Q  29 atatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaag 92  Q
    ||||||||| ||||||| ||||||| |||||||||||| ||| ||||||||||||||| |||||    
T  34618846 atatatttagaacaaccgacatcaaattagattgataggaatttgaaggcaaaaagaatttaag 34618909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 3956784 - 3956858
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatgaaggcaaaaagaaattaagg 93  Q
    ||||||||||||||||||  ||||||| | ||||| |||||||||||| ||| |||||| ||||| |||||||||    
T  3956784 acttctcttaatatatttggaacaaccgaaatcaaattagattgataggaatctgaaggtaaaaaaaaattaagg 3956858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 29171446 - 29171501
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatga 74  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  29171446 acttgtcttaatatatttaaaacaaccaacatcgaattagattgataggaatatga 29171501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 35549716 - 35549791
Alignment:
Q  59 attgatagaaatatgaaggcaaaaagaaattaaggatgaaataactaat-aaatagctagcattgaaatagaactt 133  Q
    |||||||| ||| ||||||||||||||| |||||| | ||||||| ||| |||||| ||||||| |||| ||||||    
T  35549716 attgataggaatctgaaggcaaaaagaatttaaggttcaaataaccaataaaataggtagcattaaaatcgaactt 35549791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7300672 - 7300724
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaata 71  Q
    |||| |||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  7300672 acttatcttaatatatttaaaacaatcaacatcaaattagattaatagaaata 7300724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 7300277 - 7300332
Alignment:
Q  19 acttctcttaatatatttaaaacaaccaacatcaagttagattgatagaaatatga 74  Q
    |||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||    
T  7300277 acttgtcttaatatatttaaaacaatcaacatcgaattagattgataggaatatga 7300332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University