View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_high_39 (Length: 240)
Name: NF7025_high_39
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39280375 - 39280160
Alignment:
| Q |
1 |
acttgaaagaaataggaatagttcgtttgctgggttttacatcgtttacatcgttatctaataaaagagtgcaatgtccggatcgtgttcggttctcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280375 |
acttgaaagaaataggaatagttcgtttgctgggttttacatcgtt---------atctaataaaagagtgcaatgtccggatcgtgttcggttctcatg |
39280285 |
T |
|
| Q |
101 |
gctgaacttcggggaatttacaatacaattgaaatagtttaagagattcttgtcaatcattcatttacaaagtaccaacctcaaagaccttgcagaagtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280284 |
gctgaacttcggggaatttacaatacaattgaaatagtttaagagattcttgtcaatcattcatttacaaagtaccaacctcaaagaccttgcagaagtt |
39280185 |
T |
|
| Q |
201 |
tcacaggcttcttaagcctccttat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
39280184 |
tcacaggcttcttaagcctccttat |
39280160 |
T |
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