View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7025_high_41 (Length: 238)
Name: NF7025_high_41
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10162628 - 10162406
Alignment:
| Q |
1 |
tagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacacagtttcttggttggtcagaatgcataggccatgctgctattggcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10162628 |
tagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacacagtttcttggttggtcagaatgcataggccatgctgctattggcac |
10162529 |
T |
|
| Q |
101 |
ccccattgaaatggtctctaagatagagttccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatcc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10162528 |
ccccattgaaatggtctctaaggtagagttccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatcc |
10162429 |
T |
|
| Q |
201 |
ctcacaacaaagcccattccttc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10162428 |
ctcacaacaaagcccattccttc |
10162406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1609626 - 1609404
Alignment:
| Q |
1 |
tagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacacagtttcttggttggtcagaatgcataggccatgctgctattggcac |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1609626 |
tagcccaatccatcacaaccaaaccaatctttaacacttgtgttatgaaaacacagtttcttggctggtcagaatgcataggccatgctgctattggcac |
1609527 |
T |
|
| Q |
101 |
ccccattgaaatggtctctaagatagagttccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatcc |
200 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1609526 |
ccccattgaaatgctctctaaagtagagttccatccgcaatgactcataaaccctcctgttgaagggtggcttagaatttccaactggggtgcccaatcc |
1609427 |
T |
|
| Q |
201 |
ctcacaacaaagcccattccttc |
223 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
1609426 |
ctcacaacaaaccccattccttc |
1609404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 37722076 - 37721878
Alignment:
| Q |
9 |
tccttcacaaccaaaccaatctttaacacttgtgttatcaaaacacagtttcttggttggtcagaatgcataggccatgctgctattggcacccccattg |
108 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || | ||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
37722076 |
tccttcacaaccaaaccaatcttaagcacttccgtaactaaaactctgttcctaggttggtcagagtgcataggccatgctgctattggcacccccatag |
37721977 |
T |
|
| Q |
109 |
aaatggtctctaagatagagttccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaa |
207 |
Q |
| |
|
||| |||| | ||| ||||||||||||||||||||||| || || | |||| || |||| ||||||||| || || |||||||| ||||||| |
|
|
| T |
37721976 |
taatactctccatacaagaattccatccacaatgactcataaaaccacctatagaagaatgacttaaaatttccaattgtggggcccaatctctcacaa |
37721878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University