View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_high_45 (Length: 220)
Name: NF7025_high_45
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 33423863 - 33424057
Alignment:
| Q |
12 |
cgaagaatatgattgtggatctcaattgagtcgctttctcttgggtcttatacaaca---tggattaagttgaactaagaagcaagcaaacattttgtat |
108 |
Q |
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| T |
33423863 |
cgaacaatatgattgtggatctcaattgagtcgctttctcttgggtcttatacaacaatatggattaagttgaactaagaagcaagcaaacattttgtat |
33423962 |
T |
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| Q |
109 |
aataaattattaatgaaagttcgagttacaatctgatttgaaagaactcatgcacaaaccaaaacataacaggatataaaattgaggaccaaatt |
203 |
Q |
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| T |
33423963 |
aataaattattaatgaaagttagagttacaatctgatttgaaagaactcatgcacaaaccaaaacataacaggatataaaattgaggaccaaatt |
33424057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 203
Target Start/End: Original strand, 33410019 - 33410158
Alignment:
| Q |
64 |
caacatggattaagttgaactaagaagcaagcaaacattttgtataataaattattaatgaaagttcgagttacaatctgatttgaaagaa-ctcatgca |
162 |
Q |
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| T |
33410019 |
caacatggataaa-ttgaaataagaagtaagctaacacttttaataacaaattcttaatgaatgggagagttacaatctgatttgaaggaaactcgagaa |
33410117 |
T |
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| Q |
163 |
caaaccaaaacataacaggatataaaattgaggaccaaatt |
203 |
Q |
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| T |
33410118 |
caaaccaaaacataacaagatataaaattgaggatcaaatt |
33410158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 33415854 - 33415913
Alignment:
| Q |
44 |
gctttctcttgggtcttatacaacatggattaagttgaactaagaagcaagcaaacatttt |
104 |
Q |
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| T |
33415854 |
gctttctcttgggtcttttgca-catggataaagttgaactaagaagtaaggaaacatttt |
33415913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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