View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7025_high_8 (Length: 564)
Name: NF7025_high_8
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 132 - 445
Target Start/End: Complemental strand, 45338825 - 45338514
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45338825 |
caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttg |
45338728 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45338727 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
45338628 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45338627 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
45338528 |
T |
|
| Q |
432 |
tcaatctccaacac |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45338527 |
tcaatctccaacac |
45338514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 132 - 445
Target Start/End: Complemental strand, 45336513 - 45336202
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45336513 |
caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttg |
45336416 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45336415 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
45336316 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
431 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45336315 |
aaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
45336216 |
T |
|
| Q |
432 |
tcaatctccaacac |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45336215 |
tcaatctccaacac |
45336202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 132 - 444
Target Start/End: Complemental strand, 17649125 - 17648811
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17649125 |
caacaatgttttgtgaacaaagtaaaaaaaact--aagatactttgatacatttagctgaagcatacataacaaatatatagagccaagccataagcttg |
17649028 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattaccta-ggactctt--actt |
328 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| || || | |
|
|
| T |
17649027 |
cttgtaagattgaacataaaatatgcactaaatctactctaaacactagtcatcattacctaagaatattagacatcattacctaaggactattttacat |
17648928 |
T |
|
| Q |
329 |
accaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataa-ca--acacaattaattattaaatcaga |
425 |
Q |
| |
|
|| ||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||| | || |||||| |||||| ||| |||| |
|
|
| T |
17648927 |
acttaataagcaacaatctaattatgacatt--aacttaaacaagcaacaagctaattatgacagaaaaacagcagcacacaagtaattaacaaaacaga |
17648830 |
T |
|
| Q |
426 |
aaaatatcaatctccaaca |
444 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17648829 |
aaaatatcaatctccaaca |
17648811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 166 - 397
Target Start/End: Complemental strand, 14662553 - 14662318
Alignment:
| Q |
166 |
taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatc |
265 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||| ||||| |
|
|
| T |
14662553 |
taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataaacttgcttgtaaaactgaacataagatctgcacgaaatc |
14662454 |
T |
|
| Q |
266 |
tactc-taaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttacttaccaaataagcaacaatctaactatgacactta |
361 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||| ||||| ||||||||||| |||| | |||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
14662453 |
tactcttaagcactagtcattattacctagcaacaatagacatcattacctagggactgttttacttactaaataagcaacgatctaattatgacactta |
14662354 |
T |
|
| Q |
362 |
aacttaaacaagcaacacattaattatgacagaaaa |
397 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |
|
|
| T |
14662353 |
tacataaacaagcaacactttaattatgacagaaaa |
14662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 454 - 546
Target Start/End: Complemental strand, 24142660 - 24142568
Alignment:
| Q |
454 |
tctctagtcttggccaattaaaattgtgacctaaattttgcagggatctctggtatctacttaatagccgagatattttttctggaagcctgt |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142660 |
tctctagtcttggccaattaaaattgtgacctaaattttgcagggatctccggaatctacttaatagccgagatattttttctggaagcctgt |
24142568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 166 - 289
Target Start/End: Complemental strand, 1454149 - 1454025
Alignment:
| Q |
166 |
taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaa-tctgcactaaat |
264 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | | || |||||| |||||| ||||| |
|
|
| T |
1454149 |
taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataagctttcttgtaaaattgaaaataaaactctgcagtaaat |
1454050 |
T |
|
| Q |
265 |
ctactctaaacactagtcatcatta |
289 |
Q |
| |
|
||| | ||||||||||||||||||| |
|
|
| T |
1454049 |
ctattttaaacactagtcatcatta |
1454025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 132882 - 132764
Alignment:
| Q |
172 |
actttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactct |
271 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||| || || ||||||||| |||||||||||| |
|
|
| T |
132882 |
actttaatacatcaaactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaatcaaatctgcaataaatctactct |
132783 |
T |
|
| Q |
272 |
aaacactagtcatcattac |
290 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
132782 |
aaacactagccatcattac |
132764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 45336615 - 45336580
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45336615 |
gttagcttttgcaaaggcagcagaagcaataagctc |
45336580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 45338927 - 45338892
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45338927 |
gttagcttttgcaaaggcagcagaagcaataagctc |
45338892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 132 - 445
Target Start/End: Complemental strand, 32800572 - 32800261
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32800572 |
caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttg |
32800475 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32800474 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
32800375 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
431 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32800374 |
aaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
32800275 |
T |
|
| Q |
432 |
tcaatctccaacac |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32800274 |
tcaatctccaacac |
32800261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 132 - 444
Target Start/End: Complemental strand, 32798260 - 32797950
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32798260 |
caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttg |
32798163 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32798162 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
32798063 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
431 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32798062 |
aaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
32797963 |
T |
|
| Q |
432 |
tcaatctccaaca |
444 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32797962 |
tcaatctccaaca |
32797950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 32798365 - 32798327
Alignment:
| Q |
27 |
accgttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32798365 |
accgttagcttttgcaaaggcagcagaagcaataagctc |
32798327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 32800674 - 32800639
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32800674 |
gttagcttttgcaaaggcagcagaagcaataagctc |
32800639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 132 - 445
Target Start/End: Complemental strand, 44734406 - 44734095
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44734406 |
caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataagcttg |
44734309 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44734308 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactcttacttacc |
44734209 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
431 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44734208 |
aaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaatttttaaatcagaaaaata |
44734109 |
T |
|
| Q |
432 |
tcaatctccaacac |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44734108 |
tcaatctccaacac |
44734095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 137 - 443
Target Start/End: Complemental strand, 44732090 - 44731786
Alignment:
| Q |
137 |
atgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgt |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44732090 |
atgttttgtgaaaaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataagcttgcttgt |
44731993 |
T |
|
| Q |
237 |
aagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaaata |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
44731992 |
aagactaaacataaaatctgcactaaatctactctaaacactagtcatcatcacctaagaaccatatacatcattacctaggactcttacttaccaaata |
44731893 |
T |
|
| Q |
337 |
agcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatcaat |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44731892 |
agcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaatttttaaatcagaaaaatatcaat |
44731793 |
T |
|
| Q |
437 |
ctccaac |
443 |
Q |
| |
|
||||||| |
|
|
| T |
44731792 |
ctccaac |
44731786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 44732199 - 44732164
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44732199 |
gttagcttttgcaaaggcagcagaagcaataagctc |
44732164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 44734512 - 44734477
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44734512 |
gttagcttttgcaaaggcagcagaagcaataagctc |
44734477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 132 - 445
Target Start/End: Complemental strand, 1550411 - 1550099
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaa-gctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagctt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1550411 |
caacaatgttttgtgaacaaagtactaaaaagct--aagatactttgatacattaaacttaagcatacattacaaatatatagagccaagccataagctt |
1550314 |
T |
|
| Q |
231 |
gcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttac |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1550313 |
gcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttac |
1550214 |
T |
|
| Q |
331 |
caaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaat |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1550213 |
caaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaataacaacacaattaattattaaatcagaaaaat |
1550114 |
T |
|
| Q |
431 |
atcaatctccaacac |
445 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1550113 |
atcaatctccaacac |
1550099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 132 - 449
Target Start/End: Complemental strand, 9535509 - 9535194
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
9535509 |
caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaaacatacactacaaatatatagagtcaagccataaacttg |
9535412 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9535411 |
cttgtaagactaaacataaaatctacactaaatctactctaaacactagtcatcattacctaagaaccatagaaatcattacctaggactcttacttacc |
9535312 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
431 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9535311 |
aaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaataacaacacaattaattattaaaccagaaaaata |
9535212 |
T |
|
| Q |
432 |
tcaatctccaacacaaat |
449 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
9535211 |
tcaatctccaacataaat |
9535194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 47695723 - 47695769
Alignment:
| Q |
165 |
ttaagatactttgatacattaaacttaagcatacactacaaatatat |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
47695723 |
ttaagataatttgatacattaaactaaagcatacactgcaaatatat |
47695769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 1550513 - 1550478
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1550513 |
gttagcttttgcaaaggcagcagaagcaataagctc |
1550478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 132 - 444
Target Start/End: Complemental strand, 28784767 - 28784457
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28784767 |
caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagaatcaagccataagcttg |
28784670 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28784669 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactcttacttacc |
28784570 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaata |
431 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28784569 |
aaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaaaataacaacacaattaatttttaaatcagaaaaata |
28784470 |
T |
|
| Q |
432 |
tcaatctccaaca |
444 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28784469 |
tcaatctccaaca |
28784457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 132 - 444
Target Start/End: Original strand, 48707585 - 48707901
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48707585 |
caacaatattttgtgaacaaagtactaaaagct--aagatactttgatacgttaaatttaagcatacactacaaatatatagagtcaagccataagcttg |
48707682 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacc |
331 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48707683 |
cttgtaagactaaacataaaatctacactaaatctactttaaacactagtcatcattacctaaaaaccatagacatcattacctaggactcttacttacc |
48707782 |
T |
|
| Q |
332 |
aaataagcaacaatctaactatgac------acttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcaga |
425 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48707783 |
aaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcaga |
48707882 |
T |
|
| Q |
426 |
aaaatatcaatctccaaca |
444 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48707883 |
aaaatatcaatctccaaca |
48707901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 165 - 445
Target Start/End: Original strand, 48023921 - 48024206
Alignment:
| Q |
165 |
ttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaat |
264 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48023921 |
ttaagatacttttatacattaaactgaagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactgaacataaaatctgcactaaat |
48024020 |
T |
|
| Q |
265 |
ctactc-taaacactagtcatcattacctaagaaccatagatatcattacc-taggac--tcttacttaccaaataagcaacaatctaactatgacactt |
360 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| | |||| ||||||||| | |||| | |||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
48024021 |
ctactcttaagcactagtcatcattacctaagttcattagacatcattaccttgggactgttttacttactaaataagcaacaatctaattatgacactt |
48024120 |
T |
|
| Q |
361 |
aaacttaaacaagcaacacattaattatgacagaaaataacaaca-caattaattattaaatcagaaaaatatcaatctccaacac |
445 |
Q |
| |
|
| || |||||||| ||||| ||||||||||||||||| | || | || |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
48024121 |
atacataaacaagtaacactttaattatgacagaaaacagcagtagaaaataattaacaaaagagaaaaatatcaatctccaacac |
48024206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 5354551 - 5354688
Alignment:
| Q |
183 |
ttaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5354551 |
ttaaacttaagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtc |
5354650 |
T |
|
| Q |
283 |
atcattacctaagaaccatagatatcattacctaggac |
320 |
Q |
| |
|
|| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
5354651 |
attattacctaagaaccataaacatcattacctaggac |
5354688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 228 - 445
Target Start/End: Original strand, 48025095 - 48025317
Alignment:
| Q |
228 |
cttgcttgtaagactaaacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctaggactc---t |
323 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| || || | | |
|
|
| T |
48025095 |
cttgcttgtaagaaggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattaacttgggattgttt |
48025194 |
T |
|
| Q |
324 |
tacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca-caattaattattaaatc |
422 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||| || |||||||||||||| ||||||||||||||||| | || | || |||||| ||| | |
|
|
| T |
48025195 |
tacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaaac |
48025294 |
T |
|
| Q |
423 |
agaaaaatatcaatctccaacac |
445 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48025295 |
agaaaaatatcaatctccaacac |
48025317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 48027291 - 48027448
Alignment:
| Q |
244 |
aacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctagg-actctt--acttaccaaataagc |
339 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||||||||| ||| || |||||| |||||||| |
|
|
| T |
48027291 |
aacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacctagggactgttttacttactaaataagc |
48027390 |
T |
|
| Q |
340 |
aacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa |
397 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||| | ||||||| ||||||| |
|
|
| T |
48027391 |
aacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaa |
48027448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 228 - 445
Target Start/End: Original strand, 48024535 - 48024757
Alignment:
| Q |
228 |
cttgcttgtaagactaaacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacc-taggac--tct |
323 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| | || |||||||||||||||||||||||| ||| | ||||||||| | |||| | | |
|
|
| T |
48024535 |
cttgcttgtaagaaggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattaccttgggactgttt |
48024634 |
T |
|
| Q |
324 |
tacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca-caattaattattaaatc |
422 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| || |||||| |||||| ||||||||||||||||| | || | || |||||| ||| | |
|
|
| T |
48024635 |
tacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtagaaaataattaacaaaac |
48024734 |
T |
|
| Q |
423 |
agaaaaatatcaatctccaacac |
445 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
48024735 |
ataaaaatatcaatctccaacac |
48024757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 5913592 - 5913484
Alignment:
| Q |
168 |
agatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatcta |
267 |
Q |
| |
|
||||||||||||||||||| | | ||||| |||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
5913592 |
agatactttgatacattaagttgtatcatacttaacaaatatatagagtcaaaccataagcttgcttgtaagattgaacataaaatctgcattaaatcta |
5913493 |
T |
|
| Q |
268 |
ctctaaaca |
276 |
Q |
| |
|
||||||||| |
|
|
| T |
5913492 |
ctctaaaca |
5913484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 5353449 - 5353506
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaactta |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5353449 |
caacaatgttttgtgaacaaagtactaaaagc--taagatactttgatacattaaactta |
5353506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 445
Target Start/End: Complemental strand, 5907781 - 5907717
Alignment:
| Q |
382 |
taattatgacagaaaataacaa-cacaattaattattaaatcagaaaaatatcaatctccaacac |
445 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5907781 |
taattatgacagaaaattacaaacacaagtaattattaaaccagaaaaatatcaatctccaacac |
5907717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 5907859 - 5907771
Alignment:
| Q |
272 |
aaacactagtcatcattacctaagaaccatagatatcattacctag-gactctt--acttaccaaataagcaacaatctaactatgaca |
357 |
Q |
| |
|
||||| |||||||||||||||||||||| || | || ||||||||| |||| || |||| | |||||||||||||||||| ||||||| |
|
|
| T |
5907859 |
aaacattagtcatcattacctaagaaccgtatacattattacctagagactttttcacttgctaaataagcaacaatctaattatgaca |
5907771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 5353345 - 5353380
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5353345 |
gttagcttttgcaaaggcagcagaagcaataagctc |
5353380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 28784870 - 28784835
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28784870 |
gttagcttttgcaaaggcagcagaagcaataagctc |
28784835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 133 - 444
Target Start/End: Complemental strand, 22804864 - 22804553
Alignment:
| Q |
133 |
aacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgc |
232 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
22804864 |
aacaatattttgtgaaaaaagtactaaaag--ttaagatactttgatacattaaacttaaacatacactacaaatatatagagccaagccataagtctgt |
22804767 |
T |
|
| Q |
233 |
ttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactc--ttacttac |
330 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
22804766 |
ttgtaagactaaacataaaatctgcattaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactcttttacttac |
22804667 |
T |
|
| Q |
331 |
caaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaat |
430 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22804666 |
caaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaaataacaacacaattaattattaaaccagaaaaat |
22804567 |
T |
|
| Q |
431 |
atcaatctccaaca |
444 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22804566 |
atcaatctccaaca |
22804553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 166 - 397
Target Start/End: Original strand, 7230887 - 7231118
Alignment:
| Q |
166 |
taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatc |
265 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||| ||||| ||||||||||||||||||| ||| |||| |||| | |||||||||||||||||||||| |
|
|
| T |
7230887 |
taagatactttgacacattaagttaaagcatacataacaaa-atatagagccaagccataaactttcttggaagattgaacataaaatctgcactaaatc |
7230985 |
T |
|
| Q |
266 |
tactctaaacactagtcatcattacctaagaaccatagatatcattaccta-ggact--cttacttaccaaataagcaacaatctaactatgacacttaa |
362 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||| ||||||||| |||||||| ||||||||| | |
|
|
| T |
7230986 |
tgctctaaacactagtcatcattacctaggaaccatagacatcattacctacggactactttacttactaaataagcagcaatctaattatgacact--a |
7231083 |
T |
|
| Q |
363 |
acttaaacaagcaacacattaattatgacagaaaa |
397 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
7231084 |
acttaaacaagcaacaatctaattatgacagaaaa |
7231118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 44640179 - 44640115
Alignment:
| Q |
382 |
taattatgacagaaaat-aacaacacaattaatt-attaaatcagaaaaatatcaatctccaaca |
444 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
44640179 |
taattatgacagaaaaacaacaacacaaatcatttattaaaccagaaaaatatcaatctccaaca |
44640115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 22804967 - 22804932
Alignment:
| Q |
30 |
gttagcttttgcaaaggcagcagaatcaataagctc |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22804967 |
gttagcttttgcaaaggcagcagaagcaataagctc |
22804932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 132 - 403
Target Start/End: Original strand, 13108714 - 13108986
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
13108714 |
caacaatgttttgtgaacaaagtaa-aaaagct--aagatactttgatacattaaactgaagcatacactacaaatatatggagtcaagccataagtttg |
13108810 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttact |
327 |
Q |
| |
|
||||||||||| || ||||||| || |||||||||||| ||| ||||||||||||||||| |||||| ||| |||||||||||| |||| | ||||| |
|
|
| T |
13108811 |
cttgtaagactgaatataaaatatgttctaaatctactcttaagcactagtcatcattacccaagaacaatatgtatcattacctagggactgttttact |
13108910 |
T |
|
| Q |
328 |
taccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaa |
403 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13108911 |
tactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaa |
13108986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 132 - 444
Target Start/End: Original strand, 13111006 - 13111321
Alignment:
| Q |
132 |
caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttg |
231 |
Q |
| |
|
||||||| |||||||||||||||| ||||| || || ||| |||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
13111006 |
caacaatattttgtgaacaaagtaataaaaact--aaaatattttgatacattaaactgaagcataaaatacaaatatattgagccaagccataagcttg |
13111103 |
T |
|
| Q |
232 |
cttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttact |
327 |
Q |
| |
|
||||||||| | | |||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||| || |||||||| |||| | ||||| |
|
|
| T |
13111104 |
cttgtaagagtgagcataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaacaatagacattattacctagggactattttact |
13111203 |
T |
|
| Q |
328 |
taccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca-acacaattaattattaaatcagaa |
426 |
Q |
| |
|
||| |||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||||||||||| | || | || |||||| ||| ||||| |
|
|
| T |
13111204 |
tactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaacaaaacagaa |
13111303 |
T |
|
| Q |
427 |
aaatatcaatctccaaca |
444 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13111304 |
aaatatcaatctccaaca |
13111321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 166 - 402
Target Start/End: Complemental strand, 6723687 - 6723446
Alignment:
| Q |
166 |
taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaac--ataaaatctgcactaaa |
263 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||| ||||||||||||||||| |||||| ||| |||||||||| ||| ||||||| || | |||| |
|
|
| T |
6723687 |
taagatattttgatacattaaactaaatcatacactataaatatatagagccaagtcataagtttgtttgtaagactcaacatataaaatttgtattaaa |
6723588 |
T |
|
| Q |
264 |
tctactctaaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttacttaccaaataagcaacaatctaactatgacactt |
360 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| | || || ||||| |||| | |||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
6723587 |
tctactctaaacacgagtcatcattacctaagaacaataaacattatcacctagggactgttttacttactaaataagcaacaatctaattatgacactt |
6723488 |
T |
|
| Q |
361 |
aaacttaaacaagcaacacattaattatgacagaaaataaca |
402 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6723487 |
acacttaaacaagcaacactttaattatgacagaaaacaaca |
6723446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University