View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_10 (Length: 502)
Name: NF7025_low_10
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 13574860 - 13575276
Alignment:
| Q |
18 |
tttggaagtgtaacgatgatcctcattctgtctactgtcactggtacaacaaaaggttttgctctaccggatctgttacttgtgattatcctcctaaacc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
13574860 |
tttggaagtgtaacgatgatcctcattctgtctactgtcactggtacaacaaaaggttttgctctaccggacctgttagttgtgattatcctcctaaacc |
13574959 |
T |
|
| Q |
118 |
tgaaagtactcttccatgatcattgttagtgaacatggctggtgtgtgttaatgatatatttgttatatctataataatgttgtgtgaatgtgtgagtat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
13574960 |
tgaaagtactcttccatgatcattgttagtgaacatggctggtgtgtctt--------------tatatctataataatgttgtgtgaatgtgtgagtat |
13575045 |
T |
|
| Q |
218 |
tataatatcaaaactatagagctaaattaactttatgagaggcttgtttggactttgggtacgtacgtctgctccagatatgtagttttacttttatgct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
13575046 |
tataatatcaaaactatagagctaaattaactttatgagaggcttgtttggactttgggtatgtacatctgctccagatatgtagttttacttttatgct |
13575145 |
T |
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| Q |
318 |
atactacataaactatttgtattacagtgtgatatgttataaattactatatgaaatattggaataaattggtttactttcatgtgtagggataatctga |
417 |
Q |
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| T |
13575146 |
a---tacataaactatttgtattacagtgt--catgttataaattactatatgaaatattggaataaattggtttactttcatgtgtagggataatctga |
13575240 |
T |
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| Q |
418 |
atatatattgtgtcttatctttgttttagtttatat |
453 |
Q |
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| T |
13575241 |
atatatattgtgtcttatctttgttttagtttatat |
13575276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 13571298 - 13571725
Alignment:
| Q |
19 |
ttggaagtgtaacgatgatcctcattctgtctactgtcactggtacaacaaaaggttttgctctaccggatctgttacttgtgattatcctcctaaacct |
118 |
Q |
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|||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||||||||||| ||| | || |||||||||||| | ||||||||||| |
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| T |
13571298 |
ttggaagtgttacgattatcctaattctgtctattgtcaatggtacaacaaaaggttttgcttagccgcacctattacttgtgattcttctcctaaacct |
13571397 |
T |
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| Q |
119 |
gaaagtactcttccatgatcattgttagtgaacatggctggtgtgtgttaatgatatatttgt---------tatatctataataatgttgtgtgaatgt |
209 |
Q |
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| T |
13571398 |
gaaagtactcttccatgatcattgttactgaacatggctggtgtgtcttaataatatatctatctatctatctatatctataataatgttgtgtga---- |
13571493 |
T |
|
| Q |
210 |
gtgagtattataatatcaaaactatagagctaaattaactttatgagaggcttgtttggactttgggtacgtacgtctgctccagatatgtagttttact |
309 |
Q |
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|| || ||||||||||| | |||| |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
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| T |
13571494 |
--gactactataatatcaatattatatagctaaataacctttatgagaggcttgtttggactttgg----gtacgtctgctccagatatatacttttact |
13571587 |
T |
|
| Q |
310 |
tttatgctatactacataaactatttgtattacagtgtgatatgttataaattactatatgaaatattggaataaattggtttactttcatgtgtaggga |
409 |
Q |
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| T |
13571588 |
ttta---tatgct--ttaaactatttgtattacagtgt--catgttataaattactatatgaaatattggaataaattggtgtactttcttgtgtaggga |
13571680 |
T |
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| Q |
410 |
taatctgaatat-atattgtgtcttatctttgttttagtttatat |
453 |
Q |
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|||||||||||| ||||||| | ||||||| ||||||||||||| |
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| T |
13571681 |
taatctgaatatcatattgtcttatatctttattttagtttatat |
13571725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 99 - 454
Target Start/End: Original strand, 13564109 - 13564448
Alignment:
| Q |
99 |
gtgattatcctcctaaacctgaaagtactcttccatgatcattgttagtgaacatggctggtgtgtgttaatgatatatttgttatatctataataatgt |
198 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
13564109 |
gtgattctcctcctcaacctgaaagtactcttccatgatcattcttagtgaacatggctggtgtgtcttaatgatatat---ctatatctataataatgt |
13564205 |
T |
|
| Q |
199 |
tgtgtgaatgtgtgagtattataatatcaaaactatagagctaaattaactttatgagaggcttgtttggactttgggtacgtacgtctgctccagatat |
298 |
Q |
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||||||| |||||||| ||||||||||||| | ||| |||||||| | ||||||| ||||||||| || ||||||| ||| |||||||||| |||| |
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| T |
13564206 |
tgtgtgagtgtgtgagcattataatatcaatattatgtagctaaataacctttatgggaggcttgtgtgaactttgg----gtatgtctgctccaaatat |
13564301 |
T |
|
| Q |
299 |
gtagttttacttttatgctatactacataaactatttgtattacagtgtgatatgttataaattactatatgaaatattggaataaattggtttactttc |
398 |
Q |
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| T |
13564302 |
gtagttttactttta---tatact--ataaactatttgtattacagtgt--catgttataaattactatatgaaatattggaataaattggtgtacttta |
13564394 |
T |
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| Q |
399 |
atgtgtagggataatctgaatatatattgtgtcttatctttgttttagtttatata |
454 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
13564395 |
ttttgtagggataatctgaatatatat--tgtcttatctttattttagtttatata |
13564448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 14203446 - 14203553
Alignment:
| Q |
99 |
gtgattatcctcctaaacctgaaagtactcttccatgatcattgttagtgaacatggctggtgtgtgttaatgatatatttgt-tatatctataataatg |
197 |
Q |
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|||||| |||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| |||||| | | | ||| |||||||||| |
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| T |
14203446 |
gtgattctcctcctatgcctgaaaacactcttccatgattattgttactgaacatggctggtgtgtcttaataatatatctatatctatatataataatg |
14203545 |
T |
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| Q |
198 |
ttgtgtga |
205 |
Q |
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|||||||| |
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| T |
14203546 |
ttgtgtga |
14203553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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