View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_12 (Length: 481)
Name: NF7025_low_12
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 39062270 - 39061811
Alignment:
| Q |
1 |
tggaaacgaataagaatacaaatgttaagattgatgatataagagataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaa |
100 |
Q |
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| T |
39062270 |
tggaaatgaataagaatacaaatgttaagattgatgatataagagataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaa |
39062171 |
T |
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| Q |
101 |
attggttacaaatagatccaacttctatcatattcatatata--ctaactaactaaaatgaatataactacgtacctgtatttcaacaacaaacacacat |
198 |
Q |
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| T |
39062170 |
attggttacaaatagatccaacttctatcatattcatatatatactaactaactaaaatgaatataactacgtacctgtatttcaacaacaaacacacat |
39062071 |
T |
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| Q |
199 |
tgcaaaaggccaaaaacagtggttcggttcggaattaattatgcacaacgttcattttggaatatgaacttgattatgtattccttgtacctttaggaat |
298 |
Q |
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| T |
39062070 |
tgcaaaaagccaaaaacagtggttcggttcgtaattaattatgcacaacgttcattttgaaatatgaacttaattatgtattccttgtacctttaggaat |
39061971 |
T |
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| Q |
299 |
ctgtattgcatgttgactgtgatttcttttgtcatcatttgtgggaggtaggtgttgatatagtaattcctcacaagtctcgcaacttaattgttgttaa |
398 |
Q |
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| T |
39061970 |
ctgtattgcatgttgactgtgatttcttttgtcatcatttgtgggaggtaggtgttgatatagtaattcctcacaagtctcgcaac----ttgttgttaa |
39061875 |
T |
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| Q |
399 |
tttcaccactaaaagaaattcaattagagaaggaaatttcaattttgtctctaattttgataat |
462 |
Q |
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| T |
39061874 |
tttcaccactaaaagaaattcaattagagaaggaaatttcaattttgtctctaattttgataat |
39061811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 36824461 - 36824534
Alignment:
| Q |
46 |
ataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaaattggttacaaatagatcc |
119 |
Q |
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| T |
36824461 |
ataaaagcttaagaaatgttgtattggaaacaatgagaatgatagaagtgaacaagttagttataaataaatcc |
36824534 |
T |
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