View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7025_low_14 (Length: 448)

Name: NF7025_low_14
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7025_low_14
NF7025_low_14
[»] chr3 (26 HSPs)
chr3 (111-434)||(33309417-33309740)
chr3 (24-79)||(39300641-39300696)
chr3 (12-92)||(33309771-33309845)
chr3 (115-212)||(33309948-33310043)
chr3 (24-79)||(46795685-46795740)
chr3 (113-165)||(16024805-16024857)
chr3 (115-179)||(49745736-49745799)
chr3 (115-165)||(1742004-1742054)
chr3 (119-204)||(17321880-17321964)
chr3 (27-92)||(28259910-28259975)
chr3 (27-86)||(8078403-8078462)
chr3 (40-91)||(27201678-27201729)
chr3 (116-166)||(5411845-5411895)
chr3 (115-205)||(54141374-54141462)
chr3 (115-204)||(16024520-16024607)
chr3 (113-205)||(25370307-25370397)
chr3 (115-166)||(9690226-9690277)
chr3 (115-162)||(34062795-34062842)
chr3 (136-190)||(45472210-45472263)
chr3 (115-189)||(51107969-51108042)
chr3 (33-90)||(1935163-1935220)
chr3 (118-183)||(18360669-18360733)
chr3 (115-164)||(25693333-25693382)
chr3 (27-80)||(51107796-51107849)
chr3 (115-179)||(25695047-25695110)
chr3 (122-166)||(54394342-54394386)
[»] chr4 (28 HSPs)
chr4 (12-92)||(41609217-41609297)
chr4 (24-79)||(48798541-48798596)
chr4 (112-190)||(24789662-24789739)
chr4 (112-190)||(24818520-24818597)
chr4 (27-91)||(24789755-24789818)
chr4 (27-91)||(24818441-24818504)
chr4 (19-90)||(5521407-5521478)
chr4 (115-165)||(17947289-17947339)
chr4 (115-190)||(51203232-51203306)
chr4 (24-90)||(41823728-41823794)
chr4 (32-92)||(31792776-31792836)
chr4 (115-190)||(11692162-11692236)
chr4 (115-206)||(52131904-52131993)
chr4 (136-190)||(5521527-5521580)
chr4 (112-166)||(33414292-33414346)
chr4 (125-190)||(2478946-2479010)
chr4 (14-79)||(44340791-44340856)
chr4 (52-88)||(7504873-7504909)
chr4 (113-165)||(33413860-33413912)
chr4 (118-166)||(44340962-44341010)
chr4 (13-92)||(4120032-4120111)
chr4 (115-190)||(31792635-31792709)
chr4 (122-165)||(36620950-36620993)
chr4 (136-190)||(38851985-38852038)
chr4 (42-92)||(51203326-51203376)
chr4 (117-166)||(5521244-5521293)
chr4 (23-92)||(52132012-52132081)
chr4 (142-190)||(6732854-6732901)
[»] scaffold0275 (1 HSPs)
scaffold0275 (24-79)||(9087-9142)
[»] chr5 (26 HSPs)
chr5 (24-79)||(30641729-30641784)
chr5 (115-189)||(36599832-36599907)
chr5 (115-190)||(26032259-26032333)
chr5 (135-208)||(36060759-36060830)
chr5 (115-204)||(40972122-40972209)
chr5 (32-92)||(38445888-38445948)
chr5 (118-190)||(40971851-40971922)
chr5 (13-80)||(32892301-32892368)
chr5 (119-165)||(7630624-7630670)
chr5 (117-165)||(756924-756972)
chr5 (32-92)||(15304445-15304505)
chr5 (115-203)||(38445969-38446055)
chr5 (119-190)||(30856376-30856446)
chr5 (31-86)||(38142486-38142541)
chr5 (35-85)||(21034823-21034873)
chr5 (13-79)||(41863575-41863641)
chr5 (117-206)||(18258048-18258135)
chr5 (35-92)||(26032354-26032411)
chr5 (35-92)||(36060661-36060718)
chr5 (115-167)||(17436472-17436524)
chr5 (139-201)||(12542110-12542170)
chr5 (29-91)||(17436632-17436694)
chr5 (115-165)||(21034658-21034708)
chr5 (29-79)||(41908989-41909039)
chr5 (24-92)||(756834-756901)
chr5 (32-92)||(18257966-18258026)
[»] chr7 (16 HSPs)
chr7 (115-191)||(14584938-14585013)
chr7 (115-191)||(15998808-15998883)
chr7 (25-91)||(25245360-25245426)
chr7 (19-88)||(33998683-33998752)
chr7 (32-91)||(30218948-30219007)
chr7 (117-205)||(30219031-30219117)
chr7 (19-90)||(33237102-33237173)
chr7 (115-165)||(18503602-18503652)
chr7 (112-190)||(30218760-30218837)
chr7 (121-190)||(39187701-39187769)
chr7 (117-165)||(33998854-33998902)
chr7 (49-92)||(39187544-39187587)
chr7 (117-163)||(26241524-26241570)
chr7 (115-204)||(33005135-33005223)
chr7 (126-190)||(2195364-2195426)
chr7 (32-92)||(33004952-33005012)
[»] chr6 (7 HSPs)
chr6 (19-92)||(3014381-3014454)
chr6 (115-201)||(3014545-3014630)
chr6 (27-86)||(1428879-1428938)
chr6 (31-80)||(353464-353513)
chr6 (115-190)||(4096770-4096844)
chr6 (27-72)||(2044819-2044864)
chr6 (32-92)||(34707662-34707721)
[»] chr8 (13 HSPs)
chr8 (12-79)||(22210135-22210202)
chr8 (12-92)||(23757476-23757558)
chr8 (32-91)||(33758038-33758097)
chr8 (115-165)||(15249585-15249635)
chr8 (115-165)||(23757322-23757372)
chr8 (118-203)||(23757582-23757666)
chr8 (117-165)||(36128635-36128683)
chr8 (20-87)||(5986591-5986658)
chr8 (32-91)||(13515457-13515516)
chr8 (32-91)||(13604990-13605049)
chr8 (115-165)||(158739-158789)
chr8 (115-165)||(22209994-22210044)
chr8 (136-190)||(33657592-33657645)
[»] chr2 (32 HSPs)
chr2 (24-87)||(24895646-24895709)
chr2 (12-90)||(30956143-30956221)
chr2 (115-206)||(35665323-35665412)
chr2 (27-92)||(37866478-37866543)
chr2 (25-92)||(578385-578452)
chr2 (115-169)||(578464-578518)
chr2 (116-190)||(7693578-7693651)
chr2 (115-205)||(7876157-7876245)
chr2 (120-165)||(578246-578291)
chr2 (27-80)||(7895383-7895436)
chr2 (27-92)||(11763952-11764017)
chr2 (125-190)||(17642612-17642676)
chr2 (33-90)||(42479981-42480038)
chr2 (27-91)||(1944087-1944151)
chr2 (32-92)||(37149282-37149341)
chr2 (115-190)||(12496857-12496930)
chr2 (115-190)||(28191451-28191525)
chr2 (115-162)||(35665588-35665635)
chr2 (32-90)||(12496781-12496839)
chr2 (115-164)||(25954751-25954800)
chr2 (121-201)||(11763738-11763817)
chr2 (115-167)||(12926540-12926592)
chr2 (115-166)||(1944173-1944224)
chr2 (32-91)||(7876267-7876326)
chr2 (118-165)||(37149211-37149258)
chr2 (29-92)||(43281670-43281733)
chr2 (122-204)||(24895742-24895822)
chr2 (142-207)||(7876469-7876532)
chr2 (49-90)||(34196761-34196802)
chr2 (115-208)||(43281559-43281649)
chr2 (118-205)||(10439507-10439591)
chr2 (32-92)||(27002758-27002817)
[»] chr1 (15 HSPs)
chr1 (119-190)||(1691546-1691616)
chr1 (115-206)||(14397986-14398075)
chr1 (115-165)||(10840486-10840535)
chr1 (119-165)||(33261725-33261771)
chr1 (119-165)||(33281884-33281930)
chr1 (35-80)||(10840344-10840389)
chr1 (119-207)||(33261979-33262065)
chr1 (119-207)||(33282138-33282224)
chr1 (32-91)||(14398096-14398155)
chr1 (120-190)||(7435394-7435462)
chr1 (115-165)||(27086251-27086301)
chr1 (117-165)||(14398280-14398328)
chr1 (115-158)||(27085997-27086041)
chr1 (32-92)||(33261897-33261957)
chr1 (32-92)||(33282056-33282116)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 111 - 434
Target Start/End: Complemental strand, 33309740 - 33309417
Alignment:
Q  111 gttatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctattaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33309740 gttatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctattaaa 33309641  T
Q  211 tatcatgaacaagagtactaaatggaataaagataattgaggcaaaaccttagcggattgaatcctttcaagaagtttggtgtcttcagaagtccaccct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33309640 tatcatgaacaagagtactaaatggaataaagataattgaggcaaaaccttagcggattgaatcctttcaagaagtttggtgtcttcagaagtccaccct 33309541  T
Q  311 tcaacagcactcacagtcatgataattaaatcagcacctctagcaacagcttcagatcgctctacacctattaagaggatacatacatgtggagcaatat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33309540 tcaacagcactcacagtcatgataattaaatcagcacctctagcaacagcttcagatcgctctacacctattaagaggatacatacatgtggagcaatat 33309441  T
Q  411 ggttaaagtagcaaaacactgatg 434  Q
    ||||||||||||||||||||||||    
T  33309440 ggttaaagtagcaaaacactgatg 33309417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 39300696 - 39300641
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300696 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 39300641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 33309845 - 33309771
Alignment:
Q  12 ggacatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||    
T  33309845 ggacataacatagatacatcttgaacataaaagagtgataatcttgacatt------aacataaattggccattaaggacc 33309771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 33309948 - 33310043
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctattaaata 212  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||| |||||||| | |||||||| |||||||||||| ||||    
T  33309948 tgtgaggatgaaaacaccccgttttattttttagggactaaaataaaaattcgc-tatatatttagggaag-aaaaacttatttaaccctatttaata 33310043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 46795685 - 46795740
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  46795685 gatacatcttgaacataaaagagtgataatattgacattaatatgagcataaattg 46795740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 16024805 - 16024857
Alignment:
Q  113 tatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  16024805 tatgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatt 16024857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 49745799 - 49745736
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatattttta 179  Q
    |||||| ||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  49745799 tgtgagaatgaaaacatcccgttttattttttaaatactaaaatcaaaattca-ttatattttta 49745736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 1742054 - 1742004
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  1742054 tgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatt 1742004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 17321880 - 17321964
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccct 204  Q
    ||||||||| || | ||||||||||| || ||||| |||||||||| |  |||||||| ||||||||||||||||| |||||||||    
T  17321880 aggatgaaagcacctcgttttattttataaggactgaaatcaaaat-ctgttatatttatagggacgaaaaaacttatttaaccct 17321964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 28259910 - 28259975
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||| ||||| |||||||||| |||||||||||||| |||  |||||||||||||||||| |||||    
T  28259910 acattttgaaaataaaagagtcataatcttgacattcataataacataaattggccattagggacc 28259975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 8078462 - 8078403
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccatta 86  Q
    |||||||||||||||||||||  |||| |||||||| ||||| | |||||||||||||||    
T  8078462 acatcttgaacataaaagagtcgtaatgttgacattcatatgtaaataaattggccatta 8078403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 27201729 - 27201678
Alignment:
Q  40 aaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    |||||| |||||||||| ||||||||||||||||||||| | ||||||||||    
T  27201729 aaaagaatgataatcttaacattaatatgaacataaattagtcattaaggac 27201678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 5411895 - 5411845
Alignment:
Q  116 gtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattc 166  Q
    |||||||||||||||||| |||||||||| || |||||||||| |||||||    
T  5411895 gtgaggatgaaaacatccagttttattttataaggactaaaataaaaattc 5411845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 54141462 - 54141374
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaacccta 205  Q
    ||||||||||||||||| |  |||||||||||| | |||| ||||||||||| | |||||||||| ||| | |||||||| ||||||||||    
T  54141462 tgtgaggatgaaaacattcaattttattttttaagaactacaatcaaaattcgc-tatatttttatggaag-aaaaacttatttaacccta 54141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 16024607 - 16024520
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccct 204  Q
    ||||| ||||||||||| | |||| |||||||||||| |||||||||||||| | ||||||| | | |||| |||||||| |||||||||    
T  16024607 tgtgaagatgaaaacattcagtttaattttttagggattaaaatcaaaattcgc-tatatttattgagacg-aaaaacttatttaaccct 16024520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 25370397 - 25370307
Alignment:
Q  113 tatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaacccta 205  Q
    ||||| ||||||||| || ||| |||||||||||||||||| ||||||||||||  |||||||||| |  |  ||||||||| ||||||||||    
T  25370397 tatgtaaggatgaaaccaacccattttattttttagggact-aaatcaaaattc-gttatattttttgaaaaaaaaaaacttatttaacccta 25370307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 9690277 - 9690226
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattc 166  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||| |||||||    
T  9690277 tgtgaggatgaaaacattcatttttattttttagggacaaaaattaaaattc 9690226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 34062795 - 34062842
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaa 162  Q
    |||||||||||||| |||  ||||||||||||||||| ||||||||||    
T  34062795 tgtgaggatgaaaatatcatgttttattttttagggattaaaatcaaa 34062842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 45472210 - 45472263
Alignment:
Q  136 ttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||| |||||||||| ||||||||| || |||||||||||| |||||    
T  45472210 ttttattttttaaggactaaaattaaaattcac-taaatttttagggactaaaaa 45472263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 51107969 - 51108042
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaa 189  Q
    ||||| |||||||||| |  ||||||||||||| ||||||||||||||| ||  |||||||| ||||||| ||||    
T  51107969 tgtgatgatgaaaacaccttgttttattttttaaggactaaaatcaaaa-tctgttatatttatagggactaaaa 51108042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 1935220 - 1935163
Alignment:
Q  33 tgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaagga 90  Q
    |||| ||||||| || |||||||||||||| | ||||||||||| |||| ||||||||    
T  1935220 tgaatataaaagtgttataatcttgacattcacatgaacataaagtggcaattaagga 1935163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 18360733 - 18360669
Alignment:
Q  118 gaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttaggga 183  Q
    |||||| |||||||| | ||||  ||||| |||| |||||||||||||||| ||||||||||||||    
T  18360733 gaggataaaaacatctcatttttattttttgggattaaaatcaaaattcac-tatatttttaggga 18360669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 25693382 - 25693333
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaat 164  Q
    |||||||||||||||| | ||||||||||| || |||| |||||||||||    
T  25693382 tgtgaggatgaaaacacctcgttttattttataaggaccaaaatcaaaat 25693333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 51107849 - 51107796
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattgg 80  Q
    |||| |||||||||||||| | |||||||||||||| |||| || |||||||||    
T  51107849 acattttgaacataaaagactcataatcttgacattcatattaaaataaattgg 51107796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 25695047 - 25695110
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatattttta 179  Q
    |||||| ||||||||||   |||| |||||||||| |||||||||||||||| | ||||||||||    
T  25695047 tgtgagaatgaaaacattttgtttaattttttaggcactaaaatcaaaattcgc-tatattttta 25695110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 54394386 - 54394342
Alignment:
Q  122 atgaaaacatcccgttttattttttagggactaaaatcaaaattc 166  Q
    |||||||||| |  ||| |||||||||||||||||||||||||||    
T  54394386 atgaaaacattcaatttaattttttagggactaaaatcaaaattc 54394342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 41609217 - 41609297
Alignment:
Q  12 ggacatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||| |||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  41609217 ggacataacatggatacatcttgatcataaaagagttataatcttgacatttatatgaacataaattagccattaaggacc 41609297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 48798596 - 48798541
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48798596 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 48798541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 24789739 - 24789662
Alignment:
Q  112 ttatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||| |||||||||||||| |||||||||||||||| |||||||||||||| |||  ||||||||||| ||||||||||    
T  24789739 ttatatgaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttc-gttatatttttaaggacgaaaaa 24789662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 24818520 - 24818597
Alignment:
Q  112 ttatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||| |||||||||||||| |||||||||||||||| |||||||||||||| |||  ||||||||||| ||||||||||    
T  24818520 ttatatgaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttc-gttatatttttaaggacgaaaaa 24818597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 24789818 - 24789755
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  24789818 acatcttgaacaaaaaagagtgataat-ttgatattaatatgaacataaattggtcattaaggac 24789755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 24818441 - 24818504
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  24818441 acatcttgaacaaaaaagagtgataat-ttgatattaatatgaacataaattggtcattaaggac 24818504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 5521407 - 5521478
Alignment:
Q  19 acatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaagga 90  Q
    |||| |||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||  ||||||||||    
T  5521407 acatggatacatcttgaccataaaagagttataatcttggcatttatatgaacataaattaaccattaagga 5521478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 17947289 - 17947339
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  17947289 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatt 17947339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 51203306 - 51203232
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||||||| ||| |  ||||||||||||||||||||||||||||||| |  |||||| |||||||||||||    
T  51203306 tgtgaggatgaaagcattctattttattttttagggactaaaatcaaaattcgc-aatatttatagggacgaaaaa 51203232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 41823728 - 41823794
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaagga 90  Q
    |||||||||||| |||||||| || |||||||||| ||| |||||||||||| |||| |||||||||    
T  41823728 gatacatcttgatcataaaagtgttataatcttgagattcatatgaacataacttggtcattaagga 41823794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 31792776 - 31792836
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||||||| |||||||||||||| | || |||||||| ||| |||||||||||    
T  31792776 ttgaacataaaagagttataatcttgacattcacataaacataaactggtcattaaggacc 31792836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 11692236 - 11692162
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||||||||   |||| ||||||||| ||||||||||||||||| | ||||||| |||||| ||||||    
T  11692236 tgtgaggatgaaaacattaagtttaattttttagagactaaaatcaaaattcgc-tatatttatagggatgaaaaa 11692162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 52131993 - 52131904
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctat 206  Q
    ||||||||||||||||| |  ||| |||||||| ||||||||||||||||||  |||||||| ||||||||  | ||||| |||||||||||    
T  52131993 tgtgaggatgaaaacattcattttaattttttatggactaaaatcaaaattc-gttatatttgtagggacg-gataacttatttaaccctat 52131904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 5521527 - 5521580
Alignment:
Q  136 ttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||| |||||||||||||||||| | ||||||| |||||||||||||    
T  5521527 ttttattttttaaggactaaaatcaaaattcgc-tatatttatagggacgaaaaa 5521580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 33414292 - 33414346
Alignment:
Q  112 ttatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattc 166  Q
    ||||| |||||||||||||  | ||||||||||||||||| ||||||||||||||    
T  33414292 ttatgcgaggatgaaaacaatcagttttattttttagggattaaaatcaaaattc 33414346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 2479010 - 2478946
Alignment:
Q  125 aaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||| | ||||| |||||||||||||||||||||||| |  ||||||| |||||||||||||    
T  2479010 aaaacatctcattttaatttttagggactaaaatcaaaatt-aaatatatttatagggacgaaaaa 2478946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 44340856 - 44340791
Alignment:
Q  14 acatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    |||| ||||||| || |||||||||||||| ||| ||||| ||||||||| |||||| ||||||||    
T  44340856 acatgacatagacacgtcttgaacataaaaaagttataatgttgacattattatgaagataaattg 44340791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 7504873 - 7504909
Alignment:
Q  52 atcttgacattaatatgaacataaattggccattaag 88  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7504873 atcttgacattaatatgaacataaattgaccattaag 7504909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 33413912 - 33413860
Alignment:
Q  113 tatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||| | ||||||||| | |||||||||||||||||||| |||||||||    
T  33413912 tatgtgagaaggaaaacatctcattttattttttagggactaatatcaaaatt 33413860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 44340962 - 44341010
Alignment:
Q  118 gaggatgaaaacatcccgttttattttttagggactaaaatcaaaattc 166  Q
    |||||| |||||| ||| ||||||||||||||||||||||||| |||||    
T  44340962 gaggattaaaacaaccctttttattttttagggactaaaatcagaattc 44341010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 4120032 - 4120111
Alignment:
Q  13 gacatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||| ||||| |||||  ||||||||  || ||| |||||||||||||| | ||||||||||| |||||||||| ||||    
T  4120032 gacataacataaatacaatttgaacatggaaaagttataatcttgacatttacatgaacataaagtggccattaaagacc 4120111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 31792709 - 31792635
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||||||||  | |||||||||||||  |||||||||||||||    ||||||| |||||||||||||    
T  31792709 tgtgaggatgaaaacatttcattttattttttagaaactaaaatcaaaatt-tgatatatttatagggacgaaaaa 31792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 36620993 - 36620950
Alignment:
Q  122 atgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    ||||||||||| | |||||||||||||| |||||||||||||||    
T  36620993 atgaaaacatctcattttattttttaggaactaaaatcaaaatt 36620950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 38852038 - 38851985
Alignment:
Q  136 ttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||| ||| ||||||||||||| | |||||||||||| |||||||||    
T  38852038 ttttattttttaaggattaaaatcaaaattta-ttatatttttagagacgaaaaa 38851985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 51203376 - 51203326
Alignment:
Q  42 aagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||| ||||| |||||||| |||| |||||||||||| |||||||||||    
T  51203376 aagagttataattttgacatttatataaacataaattggtcattaaggacc 51203326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 5521293 - 5521244
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattc 166  Q
    |||||||||||||||| | ||| ||||||||| |||| ||||||||||||    
T  5521293 tgaggatgaaaacatctcatttgattttttagagacttaaatcaaaattc 5521244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 52132081 - 52132012
Alignment:
Q  23 agatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||  |||||||||||| ||| ||||| |||||||| | ||||||||||| || | ||||||||||    
T  52132081 agatacaatttgaacataaaaaagttataattttgacattcacatgaacataaagtgactattaaggacc 52132012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 6732854 - 6732901
Alignment:
Q  142 tttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||| |||||||||||||||  ||||||||||||| ||||||||    
T  6732854 tttttagggtctaaaatcaaaattc-tttatatttttaggtacgaaaaa 6732901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 9142 - 9087
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9142 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 9087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 30641784 - 30641729
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30641784 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 30641729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 36599907 - 36599832
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcact-tatatttttagggacgaaaa 189  Q
    ||||||| ||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||||||| |||||    
T  36599907 tgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatatttttagggatgaaaa 36599832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 26032333 - 26032259
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||||||||||| | |||| |||||||||||| |||||||||||||| | ||||||| |||||||||||||    
T  26032333 tgtgaggatgaaaacattcagtttaattttttagggattaaaatcaaaattcgc-tatatttatagggacgaaaaa 26032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 36060759 - 36060830
Alignment:
Q  135 gttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctatta 208  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||  ||| |||||||| |||||||||||||    
T  36060759 gtttaattttttagggactaaaatcaaaattcac-tatatttttagaaacg-aaaaacttatttaaccctatta 36060830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 40972122 - 40972209
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccct 204  Q
    ||||||||| ||||||| |  |||||||||||||||||||||||||||||||  |||||||| |||||| ||||||| || |||||||||    
T  40972122 tgtgaggataaaaacattctattttattttttagggactaaaatcaaaattc-gttatatttatagggatgaaaaaa-ttatttaaccct 40972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 38445888 - 38445948
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||||| | |||||||||||||| | ||||||||||| |||||||||||||||    
T  38445888 ttgaacataaaagatttataatcttgacattcacatgaacataaagtggccattaaggacc 38445948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 40971922 - 40971851
Alignment:
Q  118 gaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| || ||| ||||||    
T  40971922 gaggatgaaaacatctcattttattttttagggactaaaatcaaaattta-ttatatttataaggatgaaaaa 40971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 32892301 - 32892368
Alignment:
Q  13 gacatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattgg 80  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||  ||||||  ||||||||||||||||    
T  32892301 gacataacatagatacatcttgatcataaaagagttataatccggacatttttatgaacataaattgg 32892368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 7630624 - 7630670
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  7630624 aggatgaaaacatctctttttattttttagggactaaaatcaaaatt 7630670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 756924 - 756972
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  756924 tgaggatgaaaacattgcgttttattttttagagactaaaatcaaaatt 756972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 15304505 - 15304445
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||||||| |||||| |||||||||| ||| | ||||||||||| |||||||||||||||    
T  15304505 ttgaacatataagagttataatcttgatattcacatgaacataaagtggccattaaggacc 15304445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 38445969 - 38446055
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccc 203  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||||||||||| | | ||||| |||||| | |||||||| ||||||||    
T  38445969 tgtgaggttgaaaacattcagtttaattttttagggactaaaatcaaaattcgc-tgtatttatagggatg-aaaaacttatttaaccc 38446055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 30856376 - 30856446
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||||||  ||| ||||||||||||  |||| ||||||||  ||||||||||||||||||||||    
T  30856376 aggatgaaaacatcctatttcattttttagggaacaaaaccaaaattc-gttatatttttagggacgaaaaa 30856446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 38142486 - 38142541
Alignment:
Q  31 cttgaacataaaagagtgataatcttgacattaatatgaacataaattggccatta 86  Q
    ||||||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||    
T  38142486 cttgaacataaaaaagttataatattgacattaatatgaaaataaaatggccatta 38142541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 21034823 - 21034873
Alignment:
Q  35 aacataaaagagtgataatcttgacattaatatgaacataaattggccatt 85  Q
    ||||||||||||| |||||||||||||| | ||||||||||| ||||||||    
T  21034823 aacataaaagagttataatcttgacattcacatgaacataaagtggccatt 21034873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 41863641 - 41863575
Alignment:
Q  13 gacatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    ||||| |||| || ||||||| ||||||||||||| ||||| |||||||| ||||||||| ||||||    
T  41863641 gacataacatggagacatcttcaacataaaagagtaataattttgacattcatatgaacaaaaattg 41863575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 18258048 - 18258135
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctat 206  Q
    ||||||||||||||| | |||| ||||||||||||||||||| |||  ||||  |||||||| |||| | |||||||| |||||||||||    
T  18258048 tgaggatgaaaacattcagtttaattttttagggactaaaataaaagatcac-catatttttgggga-ggaaaaacttatttaaccctat 18258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 26032411 - 26032354
Alignment:
Q  35 aacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||||||||||| |||||||||||||| | ||||||||||| ||| ||| |||||||    
T  26032411 aacataaaagagttataatcttgacattcacatgaacataaagtggtcatcaaggacc 26032354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 36060661 - 36060718
Alignment:
Q  35 aacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||||||||| | |||||||||||||| |||| || ||||||||||||||| |||||    
T  36060661 aacataaaagatttataatcttgacattcatattaatataaattggccattagggacc 36060718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 17436524 - 17436472
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattca 167  Q
    ||||| ||||||||||| | |||||||||||||| || |||||||||||||||    
T  17436524 tgtgaagatgaaaacattcagttttattttttagagattaaaatcaaaattca 17436472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 12542170 - 12542110
Alignment:
Q  139 tattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaac 201  Q
    ||||||||||||| ||||||||||||||| |||||||| ||| ||| ||||||||| ||||||    
T  12542170 tattttttagggattaaaatcaaaattca-ttatatttatagagac-aaaaaacttatttaac 12542110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 17436632 - 17436694
Alignment:
Q  29 atcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    ||||| ||||||||| ||| ||||||||||||| ||||| |||||||||| | ||||| ||||    
T  17436632 atcttaaacataaaaaagttataatcttgacatcaatataaacataaattagtcattatggac 17436694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 21034708 - 21034658
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    ||||||| |||||||||| | ||||||||||| ||||||| ||||||||||    
T  21034708 tgtgagggtgaaaacatctcattttattttttggggactataatcaaaatt 21034658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 41908989 - 41909039
Alignment:
Q  29 atcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    |||||||||||||||  || |||||||||| ||||| ||||||||||||||    
T  41908989 atcttgaacataaaattgtcataatcttgatattaacatgaacataaattg 41909039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 756834 - 756901
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||| ||||||||| | ||||| | |||| ||||||||||| ||||||||| ||||| |||||    
T  756834 gatacatcttaaacataaaaaa-tgatagtattgaaattaatatgaatataaattggtcattatggacc 756901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 18257966 - 18258026
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||||||||||  || |||||||||||||| | ||||||||||| |||| || |||||||    
T  18257966 ttgaacataaaatggttataatcttgacattcacatgaacataaaatggctatcaaggacc 18258026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 14585013 - 14584938
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaa 191  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  14585013 tgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaattta-ttatatttttagagacgaaaaaa 14584938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 15998883 - 15998808
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaa 191  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||    
T  15998883 tgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttac-tatatttttagagacgaaaaaa 15998808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 25245360 - 25245426
Alignment:
Q  25 atacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  25245360 atacatcttgatcataaaagagttataatcttgacatttatatgaacataaataggccattaaggac 25245426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 33998752 - 33998683
Alignment:
Q  19 acatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaag 88  Q
    |||||||||||  |||||||||||| ||| |||||||||||||| ||||||||||||| || ||||||||    
T  33998752 acatagatacaatttgaacataaaaaagttataatcttgacattcatatgaacataaagtgaccattaag 33998683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 30218948 - 30219007
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    |||||||||||||||| ||||| |||||||| ||||||| ||||| ||||||||||||||    
T  30218948 ttgaacataaaagagttataattttgacatttatatgaaaataaaatggccattaaggac 30219007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 30219031 - 30219117
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaacccta 205  Q
    ||||||||||||||| | ||||  |||| ||||||||||||||||||||| | ||||||| || ||||| |||||||| ||||||||||    
T  30219031 tgaggatgaaaacattcagtttagttttgtagggactaaaatcaaaattcgc-tatatttataaggacg-aaaaacttatttaacccta 30219117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 33237102 - 33237173
Alignment:
Q  19 acatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaagga 90  Q
    |||| |||||||||| |  |||||||||| | |||||||||||| ||||||| ||||||||| |||||||||    
T  33237102 acatggatacatcttaattataaaagagttacaatcttgacattcatatgaatataaattggtcattaagga 33237173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 18503652 - 18503602
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||| | ||||||||||||||||  ||||||||||||    
T  18503652 tgtgaggatgaaaacatctcattttattttttagggataaaaatcaaaatt 18503602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 30218837 - 30218760
Alignment:
Q  112 ttatgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||||||||||| | |||| ||||| |||| | ||||||||||||||  |||||||| || ||||||||||    
T  30218837 ttatgtgaggatgaaaacattcagtttaattttataggaattaaaatcaaaattc-gttatatttatatggacgaaaaa 30218760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 39187701 - 39187769
Alignment:
Q  121 gatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||| | ||||||||| ||  |||||||||||||||||| |||||||| |||| ||||||||    
T  39187701 gatgaaaacatctcattttattttctaaagactaaaatcaaaattca-ttatatttataggaacgaaaaa 39187769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 33998854 - 33998902
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    ||||||| |||| ||| | ||||||||||||||||||||||||||||||    
T  33998854 tgaggataaaaatatctcattttattttttagggactaaaatcaaaatt 33998902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 39187587 - 39187544
Alignment:
Q  49 ataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||    
T  39187587 ataattttgacatttatatgaacataaattggtcattaaggacc 39187544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 26241524 - 26241570
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaa 163  Q
    |||||||||||||||| | |||||||||||||||| |||||| ||||    
T  26241524 tgaggatgaaaacatctcattttattttttagggattaaaataaaaa 26241570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 33005135 - 33005223
Alignment:
Q  115 tgtgaggatgaaaacatcccgtttta-ttttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccct 204  Q
    ||||||||||||||| || | ||||| |||||||||||| |||| ||||||| |  ||||||| |||||||| |||||||| |||||||||    
T  33005135 tgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaattta-atatatttatagggacg-aaaaacttatttaaccct 33005223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 2195426 - 2195364
Alignment:
Q  126 aaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||| ||||||||||| |||| |||||||| |||| || |||||||||| ||||||||||    
T  2195426 aaacatcccattttatttttt-gggaataaaatcataatttac-tatatttttaaggacgaaaaa 2195364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 33005012 - 33004952
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||| ||| | ||| |||||||| | ||||| ||||| |||||||||||||||    
T  33005012 ttgaacataaaatagttacaattttgacattcacatgaaaataaagtggccattaaggacc 33004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 3014454 - 3014381
Alignment:
Q  19 acatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||| |||||||||||| ||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||||    
T  3014454 acatggatacatcttgaccataaaagagttataatcttgatatttatatgaatataaattggccattaaggacc 3014381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 3014545 - 3014630
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaac 201  Q
    ||||||||| |||||||| | |||||||||||||| | |||||| ||||||||| ||||||| |||||| |||||||||| ||||||    
T  3014545 tgtgaggataaaaacatcacattttattttttaggaattaaaataaaaattcac-tatatttatagggatgaaaaaacttatttaac 3014630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 1428879 - 1428938
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccatta 86  Q
    |||| |||||||||||||| | |||||||||||||| |||| |||||||||||| |||||    
T  1428879 acattttgaacataaaagactcataatcttgacattcatattaacataaattggtcatta 1428938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 353464 - 353513
Alignment:
Q  31 cttgaacataaaagagtgataatcttgacattaatatgaacataaattgg 80  Q
    |||||| |||||||||| ||||| ||||||||||||| ||||||||||||    
T  353464 cttgaatataaaagagtcataatattgacattaatataaacataaattgg 353513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 4096770 - 4096844
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||| |||||||||||| | ||| |||||||||||| |||||||||||||   || ||||| |||||||||||||    
T  4096770 tgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatt-tatttatagggacgaaaaa 4096844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 2044819 - 2044864
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaaca 72  Q
    ||||||||||||||||| | | ||||| ||||||||||||||||||    
T  2044819 acatcttgaacataaaacaatcataatattgacattaatatgaaca 2044864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 34707721 - 34707662
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||||| | ||||| |||||||| ||||||| || ||| ||||||||||||||    
T  34707721 ttgaacataaaagaattataattttgacattcatatgaatat-aatgggccattaaggacc 34707662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 22210135 - 22210202
Alignment:
Q  12 ggacatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattg 79  Q
    |||||| ||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||    
T  22210135 ggacataacatagatacatcttgatcataaaagtgttataatcttgacattcatatgaacataaattg 22210202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 23757476 - 23757558
Alignment:
Q  12 ggacatcacatagatacatcttgaacataaaagagtgataatcttgacattaata--tgaacataaattggccattaaggacc 92  Q
    |||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||  | |||||||| |||||||||||||||    
T  23757476 ggacataacatagatacatcttgaacataaaagagttataattttgacatttatatctaaacataaaatggccattaaggacc 23757558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 33758038 - 33758097
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    ||||| |||| ||||| |||||||||||||| | ||||||||||| ||||||||||||||    
T  33758038 ttgaatataatagagttataatcttgacattcacatgaacataaagtggccattaaggac 33758097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 15249585 - 15249635
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||| | ||||||||||||| ||| ||||||||||||    
T  15249585 tgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatt 15249635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 23757372 - 23757322
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||| | |||||||||||||||| |||||| ||||||    
T  23757372 tgtgaggatgaaaacatctcattttattttttagggattaaaattaaaatt 23757322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 23757582 - 23757666
Alignment:
Q  118 gaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttt-tagggacgaaaaaacttctttaaccc 203  Q
    ||| |||| ||||| | |||| |||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||    
T  23757582 gagtatgacaacattctgtttaattttttacggactaaaatcaaaattcac-tatattttatagggacg-aaaaacttatttaaccc 23757666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 36128683 - 36128635
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||| |||||||||||||| |||  ||||||||||||    
T  36128683 tgaggatgaaaacatctcgttttattttttaaggatcaaaatcaaaatt 36128635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 5986591 - 5986658
Alignment:
Q  20 catagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaa 87  Q
    ||||||| |||||||||  | ||||||| ||||| |||| |||||||| |||||||||||| ||||||    
T  5986591 catagatgcatcttgaattttaaagagtcataattttgagattaatataaacataaattggtcattaa 5986658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 13515516 - 13515457
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    ||||| |||| ||||| |||| ||||||||| ||||||||||||| |||| |||||||||    
T  13515516 ttgaatataatagagttataaacttgacattcatatgaacataaagtggctattaaggac 13515457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 13605049 - 13604990
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    ||||| |||| ||||| |||| ||||||||| ||||||||||||| |||| |||||||||    
T  13605049 ttgaatataatagagttataaacttgacattcatatgaacataaagtggctattaaggac 13604990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 158789 - 158739
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||| ||||||||||||| | ||||||||||||||||| |||| |||||||    
T  158789 tgtgtggatgaaaacatctcattttattttttagggaccaaaaccaaaatt 158739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 22210044 - 22209994
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||| | |||||| ||||||| || ||||||||||||    
T  22210044 tgtgaggatgaaaacatctcattttatcttttaggaacaaaaatcaaaatt 22209994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 33657592 - 33657645
Alignment:
Q  136 ttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||| |||||||| |||||||||||||||| | |||||||||| ||||||||||    
T  33657592 ttttactttttaggaactaaaatcaaaattcgc-tatatttttaaggacgaaaaa 33657645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 24895646 - 24895709
Alignment:
Q  24 gatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaa 87  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  24895646 gatacatcttgatcataaaagagttataatcttgacatttatatgaatataaattggccattaa 24895709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 30956221 - 30956143
Alignment:
Q  12 ggacatcacatagatacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaagga 90  Q
    |||||| ||||  ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||    
T  30956221 ggacataacatgaatacatcttgaccataaaagagttataatcttgacatttatatgaacctaaattggcaattaagga 30956143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 35665412 - 35665323
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctat 206  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||||||||| | ||||||| || ||||| |||||||| |||||||||||    
T  35665412 tgtgaggatgaaaacattcactttaattttttagggactaaaatcaaaattcgc-tatatttataaggacg-aaaaacttatttaaccctat 35665323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 37866478 - 37866543
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||||||  |||||| |||||    
T  37866478 acattttgaacataaaagagcgataatcttaacattaatatgaacataaatttaccattagggacc 37866543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 578385 - 578452
Alignment:
Q  25 atacatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||||| ||| ||||||||||| |||||||||| ||| ||||||||||||||||| |||||| ||||    
T  578385 atacatcctgatcataaaagagttataatcttgatattcatatgaacataaattggtcattaacgacc 578452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 578464 - 578518
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcact 169  Q
    ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||    
T  578464 tgtgaggatgacaacattctattttattttttagggactaaaatcaaaattcact 578518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 7693651 - 7693578
Alignment:
Q  116 gtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    |||||||||||||||| | |||| ||||||| ||||||||||||||||||| | ||||||| |||| ||||||||    
T  7693651 gtgaggatgaaaacattcagtttaatttttttgggactaaaatcaaaattctc-tatatttataggaacgaaaaa 7693578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 7876245 - 7876157
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaacccta 205  Q
    ||||||||||||||||| | |||| |||||||||||| | ||||||||||||| |||||||| ||||||   |||||||| ||||||||||    
T  7876245 tgtgaggatgaaaacattcagtttaattttttagggatttaaatcaaaattca-ttatatttataggga-ataaaaacttatttaacccta 7876157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 578291 - 578246
Alignment:
Q  120 ggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  578291 ggatgaaaacatctcattttattttttagggactaaaatcaaaatt 578246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 7895383 - 7895436
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattgg 80  Q
    ||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||    
T  7895383 acatcttgaacataaaagagtcaaaattttgacattaatataaacataaattgg 7895436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 11763952 - 11764017
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||||| |||| |||||||||||| ||||||||||||||| ||||||||| || ||||| |||||    
T  11763952 acatcttaaacaaaaaagagtgatagtcttgacattaatatcaacataaatcggtcattagggacc 11764017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 17642612 - 17642676
Alignment:
Q  125 aaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||| | |||| |||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  17642612 aaaacattcagtttaattttttaaggactaaaatcaaaattcgc-tatatttttagggacgaaaaa 17642676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 42480038 - 42479981
Alignment:
Q  33 tgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaagga 90  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||  |||||||||    
T  42480038 tgaacataaaatagttataatgttgacattaatatgaacataaattgttcattaagga 42479981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 1944087 - 1944151
Alignment:
Q  27 acatcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    |||| |||||||||||||| | ||||| |||||||| |||| |||||||||||||||||| ||||    
T  1944087 acattttgaacataaaagactcataattttgacattcatattaacataaattggccattagggac 1944151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 37149341 - 37149282
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||    
T  37149341 ttgaacataaaa-agtgacaatcttgacattaacatgaaaataaattggtcattaaggacc 37149282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 12496857 - 12496930
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||||||||||||  |||| |||||||||| ||||||||||||||||  |||||||| |||||| ||||||    
T  12496857 tgtgaggatgaaaacatcg-gtttgattttttaggaactaaaatcaaaattc-gttatatttatagggatgaaaaa 12496930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 28191525 - 28191451
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||||||||||| | |||| ||||| || |||||||||||||||||| | ||||||| ||||||| |||||    
T  28191525 tgtgaggatgaaaacattcagtttaattttgtacggactaaaatcaaaattcgc-tatatttatagggacaaaaaa 28191451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 35665588 - 35665635
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaa 162  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||    
T  35665588 tgtgaggatgaaaacatctcattttagtttttagggactaaaatcaaa 35665635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 12496781 - 12496839
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaagga 90  Q
    ||||||||||||| || |||||||||||||| | ||||||||||| || ||||||||||    
T  12496781 ttgaacataaaagtgttataatcttgacattcacatgaacataaagtgcccattaagga 12496839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 25954751 - 25954800
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaat 164  Q
    |||||||||||||||||| | |||||||||||||  ||||||||||||||    
T  25954751 tgtgaggatgaaaacatctcattttattttttagaaactaaaatcaaaat 25954800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 11763817 - 11763738
Alignment:
Q  121 gatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaac 201  Q
    |||||||||||| |||||||||| ||   || |||||||||||||  || |||||||||| ||||||||||||| ||||||    
T  11763817 gatgaaaacatctcgttttatttatttttgattaaaatcaaaatttgct-atatttttagagacgaaaaaacttatttaac 11763738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 12926592 - 12926540
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattca 167  Q
    |||||||||||||||| | | |||||||||| |||||| ||||||||||||||    
T  12926592 tgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattca 12926540  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 1944173 - 1944224
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattc 166  Q
    |||||||||||||| |||  |||| ||||||||| |||||||||||||||||    
T  1944173 tgtgaggatgaaaatatcatgtttaattttttagagactaaaatcaaaattc 1944224  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 7876326 - 7876267
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    |||||||||||||||| ||||| |||||||| |||| |||||||| ||| |||| |||||    
T  7876326 ttgaacataaaagagttataatattgacatttatattaacataaagtggtcatttaggac 7876267  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 37149258 - 37149211
Alignment:
Q  118 gaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    ||||||||| |||||| |||||||||||||| || |||||||||||||    
T  37149258 gaggatgaacacatcctgttttattttttagagattaaaatcaaaatt 37149211  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 43281733 - 43281670
Alignment:
Q  29 atcttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    ||||||||||||||| ||| | ||||||||||||| | | |||||||||||| ||||| |||||    
T  43281733 atcttgaacataaaatagtcacaatcttgacattattttaaacataaattggtcattagggacc 43281670  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 24895742 - 24895822
Alignment:
Q  122 atgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccct 204  Q
    |||||||||| |  ||||||||| ||||||||||||||||||||   |||||||| || ||||| |||||||| |||||||||    
T  24895742 atgaaaacattcaattttattttgtagggactaaaatcaaaatt-tgttatatttgtaaggacg-aaaaacttatttaaccct 24895822  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 7876469 - 7876532
Alignment:
Q  142 tttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctatt 207  Q
    |||||||||| ||||||||||||||| |||||||| || ||||| ||||| || ||||||||||||    
T  7876469 tttttagggattaaaatcaaaattca-ttatatttataaggacg-aaaaatttatttaaccctatt 7876532  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 34196761 - 34196802
Alignment:
Q  49 ataatcttgacattaatatgaacataaattggccattaagga 90  Q
    |||||||||||||| |||| |||||||||||| |||||||||    
T  34196761 ataatcttgacatttatataaacataaattggtcattaagga 34196802  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 43281649 - 43281559
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctatta 208  Q
    |||||||||||||||||   ||||||||||||| ||| | || ||||||| ||| ||||||| |||||||| |||||||| |||||||| ||||    
T  43281649 tgtgaggatgaaaacattatgttttatttttta-ggattgaagtcaaaatccac-tatatttgtagggacg-aaaaacttatttaacccaatta 43281559  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 10439591 - 10439507
Alignment:
Q  118 gaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaacccta 205  Q
    |||||||||||||||  |||||| | |||| |||||||||  |||||||  |||||||||||||| |  |||||||| ||||||||||    
T  10439591 gaggatgaaaacatcatgttttactctttatggactaaaaataaaattc-gttatatttttagggcc--aaaaacttatttaacccta 10439507  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 27002817 - 27002758
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||||| | ||||| |||||||| ||||||| || ||| ||||||||||||||    
T  27002817 ttgaacataaaagaattataattttgacattcatatgaatat-aatgggccattaaggacc 27002758  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 1691546 - 1691616
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||||||| | |||| ||||||||| ||||||||||||||||| | ||||||| |||||||||||||    
T  1691546 aggatgaaaacattcagtttaattttttagagactaaaatcaaaattcgc-tatatttatagggacgaaaaa 1691616  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 14398075 - 14397986
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctat 206  Q
    ||||||||||||||||| | |||| |||||||||| ||||||||||||||| | |||||||| || ||| | |||||||| |||||||||||    
T  14398075 tgtgaggatgaaaacattcagtttaattttttaggaactaaaatcaaaatt-agttatatttatatggatg-aaaaacttatttaaccctat 14397986  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 10840486 - 10840535
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  10840486 tgtgaggatgaaaacatcccgtttta-tttttaaggactaaaatcaaaatt 10840535  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 33261771 - 33261725
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  33261771 aggatgaaaacatctcattttattttttagggactaaaatcaaaatt 33261725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 33281930 - 33281884
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  33281930 aggatgaaaacatctcattttattttttagggactaaaatcaaaatt 33281884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 10840389 - 10840344
Alignment:
Q  35 aacataaaagagtgataatcttgacattaatatgaacataaattgg 80  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  10840389 aacataaaagaatcataatcttgacattaatatgaacataaattgg 10840344  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 33261979 - 33262065
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctatt 207  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||| |  ||||||| |||| ||| |||||||| ||| ||||||||    
T  33261979 aggatgaaaacattcagtttaattttttagggactaaaatcaaaatt-agctatatttataggaacg-aaaaacttatttgaccctatt 33262065  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 33282138 - 33282224
Alignment:
Q  119 aggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctatt 207  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||| |  ||||||| |||| ||| |||||||| ||| ||||||||    
T  33282138 aggatgaaaacattcagtttaattttttagggactaaaatcaaaatt-agctatatttataggaacg-aaaaacttatttgaccctatt 33282224  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 14398155 - 14398096
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggac 91  Q
    |||||||||||||| | ||||||| |||||| ||||||||||||| |||  |||||||||    
T  14398155 ttgaacataaaagaattataatctcgacattcatatgaacataaagtggttattaaggac 14398096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 7435462 - 7435394
Alignment:
Q  120 ggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaa 190  Q
    ||||||||||||  |||||||||||||||||| |||| || |||||||| |||||||||| |||| |||||    
T  7435462 ggatgaaaacatatcgttttattttttagggattaaagtc-aaattcac-tatatttttaaggacaaaaaa 7435394  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 27086251 - 27086301
Alignment:
Q  115 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    ||||||||||||||||| | |||| |||||||| |||||||||||| ||||    
T  27086251 tgtgaggatgaaaacattcagtttaattttttaaggactaaaatcagaatt 27086301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 14398280 - 14398328
Alignment:
Q  117 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 165  Q
    |||||||||||||||| | |||||||| ||||  |||||||||||||||    
T  14398280 tgaggatgaaaacatctcattttatttgttagaaactaaaatcaaaatt 14398328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 27086041 - 27085997
Alignment:
Q  115 tgtgaggatgaaaacatcccgtttt-attttttagggactaaaat 158  Q
    |||||||||||||||||| | |||| |||||||||||||||||||    
T  27086041 tgtgaggatgaaaacatctcatttttattttttagggactaaaat 27085997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 33261897 - 33261957
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||| ||| ||||| || ||||| | ||||||||||| ||| |||||||||||    
T  33261897 ttgaacataaaaaagttataatttttacattcacatgaacataaagtggtcattaaggacc 33261957  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 33282056 - 33282116
Alignment:
Q  32 ttgaacataaaagagtgataatcttgacattaatatgaacataaattggccattaaggacc 92  Q
    |||||||||||| ||| ||||| || ||||| | ||||||||||| ||| |||||||||||    
T  33282056 ttgaacataaaaaagttataatttttacattcacatgaacataaagtggtcattaaggacc 33282116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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