View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7025_low_15 (Length: 439)

Name: NF7025_low_15
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7025_low_15
NF7025_low_15
[»] chr5 (11 HSPs)
chr5 (19-385)||(31406236-31406602)
chr5 (201-381)||(24047003-24047182)
chr5 (148-208)||(23679419-23679479)
chr5 (148-208)||(23855332-23855392)
chr5 (148-208)||(31069024-31069084)
chr5 (149-208)||(5079126-5079185)
chr5 (149-208)||(17037522-17037581)
chr5 (148-208)||(7410802-7410862)
chr5 (177-208)||(12042239-12042270)
chr5 (167-208)||(9354451-9354492)
chr5 (167-208)||(18191911-18191952)
[»] chr6 (16 HSPs)
chr6 (201-381)||(14666680-14666858)
chr6 (235-365)||(14415940-14416070)
chr6 (148-208)||(14669408-14669468)
chr6 (148-208)||(17719785-17719845)
chr6 (235-364)||(11946743-11946873)
chr6 (251-365)||(14322946-14323060)
chr6 (153-208)||(15690421-15690476)
chr6 (148-208)||(16734783-16734843)
chr6 (149-208)||(11936829-11936888)
chr6 (157-208)||(12591820-12591871)
chr6 (149-208)||(6684073-6684132)
chr6 (220-290)||(17715756-17715824)
chr6 (148-208)||(15361693-15361753)
chr6 (165-208)||(4591145-4591188)
chr6 (174-207)||(1942573-1942606)
chr6 (167-208)||(6673680-6673721)
[»] chr3 (10 HSPs)
chr3 (201-365)||(1658648-1658810)
chr3 (235-362)||(13852154-13852278)
chr3 (154-208)||(13845976-13846030)
chr3 (149-208)||(1654555-1654614)
chr3 (149-207)||(7407817-7407875)
chr3 (158-207)||(1628010-1628059)
chr3 (149-208)||(2550145-2550204)
chr3 (173-208)||(16457393-16457428)
chr3 (167-208)||(1613275-1613316)
chr3 (149-208)||(2943276-2943333)
[»] chr8 (14 HSPs)
chr8 (235-365)||(28244703-28244833)
chr8 (149-208)||(19369972-19370031)
chr8 (149-208)||(19448427-19448486)
chr8 (149-208)||(19532590-19532649)
chr8 (149-207)||(18766896-18766954)
chr8 (148-208)||(5528721-5528781)
chr8 (148-208)||(17634533-17634593)
chr8 (143-205)||(25637617-25637679)
chr8 (146-208)||(25638783-25638845)
chr8 (149-208)||(28249137-28249196)
chr8 (149-208)||(45356174-45356233)
chr8 (235-272)||(45349374-45349411)
chr8 (167-208)||(29553626-29553667)
chr8 (167-208)||(31347346-31347387)
[»] scaffold0832 (1 HSPs)
scaffold0832 (235-365)||(16-146)
[»] chr7 (7 HSPs)
chr7 (235-365)||(9238050-9238179)
chr7 (149-205)||(9242549-9242605)
chr7 (149-208)||(26225040-26225099)
chr7 (149-208)||(4685465-4685524)
chr7 (149-208)||(26205477-26205536)
chr7 (146-208)||(10022100-10022162)
chr7 (149-199)||(16170250-16170300)
[»] scaffold0684 (1 HSPs)
scaffold0684 (149-205)||(812-868)
[»] chr1 (8 HSPs)
chr1 (148-208)||(37097402-37097462)
chr1 (155-208)||(16222763-16222816)
chr1 (155-208)||(51758738-51758791)
chr1 (149-207)||(15214306-15214364)
chr1 (150-208)||(15204570-15204632)
chr1 (163-208)||(18308141-18308186)
chr1 (174-208)||(28636907-28636941)
chr1 (149-208)||(13208590-13208650)
[»] chr4 (5 HSPs)
chr4 (149-208)||(1152023-1152082)
chr4 (149-208)||(1685014-1685073)
chr4 (149-208)||(47066096-47066155)
chr4 (149-208)||(53300330-53300389)
chr4 (149-208)||(43600246-43600305)
[»] chr2 (6 HSPs)
chr2 (149-208)||(30266982-30267041)
chr2 (151-205)||(44920939-44920993)
chr2 (149-208)||(30553814-30553873)
chr2 (160-208)||(31342778-31342826)
chr2 (165-207)||(7718180-7718222)
chr2 (159-208)||(15513656-15513705)
[»] scaffold0069 (1 HSPs)
scaffold0069 (149-205)||(40763-40819)
[»] scaffold0838 (1 HSPs)
scaffold0838 (251-365)||(1-115)
[»] scaffold0576 (1 HSPs)
scaffold0576 (148-208)||(6677-6737)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 31406602 - 31406236
Alignment:
Q  19 acggttttgtttccaattgaacaaaaattctgcgatcttgtcttctcagggttctcctctgccacttctcattgtttcattgagatttgccaagaagcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31406602 acggttttgtttccaattgaacaaaaattctgcgatcttgtcttctcagggttctcctctgccacttctcattgtttcattgagatttgccaagaagcaa 31406503  T
Q  119 cgtttcagctgctcaactttgcagatgtgacactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatggttctgttga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31406502 cgtttcagctgctcaactttgcagatgtgacactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatggttctgttga 31406403  T
Q  219 attgagatatcggtgagagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttg 318  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  31406402 attgagatctcggtgagagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacactttttttacctattttgttttg 31406303  T
Q  319 actattgttgactaaaatttttatcacgtgaatgaataatgaatgggatctgttgttacttgttgta 385  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  31406302 actattgttgactaaaatttttaacacgtgaatgaataatgaatgggttctgttgttacttgttgta 31406236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 201 - 381
Target Start/End: Original strand, 24047003 - 24047182
Alignment:
Q  201 gaaaaatggttctgttgaattgagatatcggtgagagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacac-nnn 299  Q
    ||||| |||||||| ||||||||||| ||||| ||||  ||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||        
T  24047003 gaaaagtggttctgctgaattgagatctcggtaagag--agaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacattt 24047100  T
Q  300 nnnnacctattttgttttgactattgttgactaaaatttttatcacgtgaatgaataatgaatgggatctgttgttacttgt 381  Q
        || ||||||  ||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||    
T  24047101 ttttacttattttaatttgactattgttaactaaaatttttaacacgtgaataaataatgaatgggttctattgttacttgt 24047182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 23679419 - 23679479
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23679419 acactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 23679479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 23855392 - 23855332
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23855392 acactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 23855332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 31069084 - 31069024
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  31069084 acactactacaataatgacatttagtaacacttaaaaattgtaactaaatcaagaaaaatg 31069024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 5079185 - 5079126
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||    
T  5079185 cactactacaataatgacaattagtaacacttgaaaattgtaactaaatcaagaaaaatg 5079126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 17037522 - 17037581
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||    
T  17037522 cactactacaataatgacatttagtaacacttgaaaatcgtaactaaatcaagaaaaatg 17037581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 7410802 - 7410862
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |||||||    
T  7410802 acactactacaataatgacaattagtaacatttcaaaattgtaactaaatcaaaaaaaatg 7410862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 208
Target Start/End: Complemental strand, 12042270 - 12042239
Alignment:
Q  177 atttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||||||||||    
T  12042270 atttgaaaattgtaactaaatcaagaaaaatg 12042239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 9354492 - 9354451
Alignment:
Q  167 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||| |||| ||||||||||||||| ||||||||||||||    
T  9354492 atttagtaacaattgaaaattgtaactgaatcaagaaaaatg 9354451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 18191952 - 18191911
Alignment:
Q  167 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  18191952 atttagtaacaattgaaaattgtaactaaattaagaaaaatg 18191911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 201 - 381
Target Start/End: Complemental strand, 14666858 - 14666680
Alignment:
Q  201 gaaaaatggttctgttgaattgagatatcggtgagagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnn 300  Q
    ||||| ||||| || | ||||||||| |||||||||||||  |||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||        
T  14666858 gaaaagtggttatgctaaattgagatctcggtgagagaga--aaagtgattttttaggtaagagagagaaaagtgtttctgaatggcttataacactttt 14666761  T
Q  301 nnnacctattttgttttgactattgttgactaaaatttttatcacgtgaatgaataatgaatgggatctgttgttacttgt 381  Q
       || |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  14666760 tttacttattttattttgactattgttgactaaaatttttaacacgtgaatgaataatgaatgggttctattgttacttgt 14666680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 14415940 - 14416070
Alignment:
Q  235 gagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaaa 334  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||   |||||| ||       |  |||||| ||||||||||||||||| |||    
T  14415940 gagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgactattgttgaccaaa 14416039  T
Q  335 atttttatcacgtgaatgaataatgaatggg 365  Q
    |  |||| |||||||||||||||||||||||    
T  14416040 aaatttaacacgtgaatgaataatgaatggg 14416070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 14669468 - 14669408
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14669468 acactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 14669408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 17719845 - 17719785
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17719845 acactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 17719785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 235 - 364
Target Start/End: Complemental strand, 11946873 - 11946743
Alignment:
Q  235 gagagagaaaagtgttttttgagggaagagagagaaaagtgtttctc-aatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaa 333  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||  |||||| ||       |  |||||| ||||||||||||||||| ||    
T  11946873 gagagagaaaggtgatttttgagggaagagagagaaaagtgtttctcaaatggtttataatactttatttatttattttattttgactattgttgaccaa 11946774  T
Q  334 aatttttatcacgtgaatgaataatgaatgg 364  Q
    ||  |||| ||||||||||||||||||||||    
T  11946773 aaaatttaacacgtgaatgaataatgaatgg 11946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 365
Target Start/End: Original strand, 14322946 - 14323060
Alignment:
Q  251 ttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaaaatttttatcacgtgaa 350  Q
    ||||||||||||||||||||||||||||||||||   |||||| ||       |  |||||| ||||||||||||||||| ||||  |||| ||||||||    
T  14322946 ttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgactattgttgaccaaaaaatttaacacgtgaa 14323045  T
Q  351 tgaataatgaatggg 365  Q
    |||||||||||||||    
T  14323046 tgaataatgaatggg 14323060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 15690421 - 15690476
Alignment:
Q  153 actacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  15690421 actacaataaagacatttagtaacatttgaaaattgtaactaaatcaagaaaaatg 15690476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 16734783 - 16734843
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||    
T  16734783 acactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatg 16734843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 11936888 - 11936829
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||    
T  11936888 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatg 11936829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 12591820 - 12591871
Alignment:
Q  157 caataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  12591820 caataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatg 12591871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 6684073 - 6684132
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| ||||||| |||| || |||||||||||| ||||||||||||||    
T  6684073 cactactacaataatggcatttagtaacacttaaaaattgtaacttaatcaagaaaaatg 6684132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 17715824 - 17715756
Alignment:
Q  220 ttgagatatcggtgagagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtctta 290  Q
    ||||||| |||||||||  |||||||| | ||||||| |||||||||||||||||||||||||||| ||||    
T  17715824 ttgagatctcggtgaga--gagaaaagagatttttgacggaagagagagaaaagtgtttctcaatggctta 17715756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 15361693 - 15361753
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||  | |||| |||| || |||||||||||||||||||||||||||    
T  15361693 acactactacaataatggtaattagtaacacttaaaaattgtaactaaatcaagaaaaatg 15361753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 4591145 - 4591188
Alignment:
Q  165 acatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||| |||||||||||||| | ||||||||||||||||||    
T  4591145 acatttagtaacatttgaaaattattactaaatcaagaaaaatg 4591188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 1942573 - 1942606
Alignment:
Q  174 aacatttgaaaattgtaactaaatcaagaaaaat 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  1942573 aacatttgataattgtaactaaatcaagaaaaat 1942606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 6673721 - 6673680
Alignment:
Q  167 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  6673721 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatg 6673680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 201 - 365
Target Start/End: Original strand, 1658648 - 1658810
Alignment:
Q  201 gaaaaatggttctgttgaattgagatatcggtgagagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnn 300  Q
    ||||| |||||||| ||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||        
T  1658648 gaaaagtggttctgctgaattgagatctcggtgaga--gagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgcttataacactttt 1658745  T
Q  301 nnnacctattttgttttgactattgttgactaaaatttttatcacgtgaatgaataatgaatggg 365  Q
       || | |||| ||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  1658746 tttactttttttattttgactattgttgactaaattttttaacatgtgaatgaataatgaatggg 1658810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 362
Target Start/End: Original strand, 13852154 - 13852278
Alignment:
Q  235 gagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaaa 334  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||          | |||| ||||||||||||||||| |||    
T  13852154 gagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttttt---tgttttattttgactattgttgaccaaa 13852250  T
Q  335 atttttatcacgtgaatgaataatgaat 362  Q
    |  |||| ||||||||||||||||||||    
T  13852251 aaatttaacacgtgaatgaataatgaat 13852278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 13845976 - 13846030
Alignment:
Q  154 ctacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13845976 ctacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 13846030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 1654555 - 1654614
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||    
T  1654555 cactactacaataatggcaattagtaacaattgaaaattgtaactaaatcaagaaaaatg 1654614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 7407875 - 7407817
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaat 207  Q
    |||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||    
T  7407875 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaat 7407817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 1628059 - 1628010
Alignment:
Q  158 aataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaat 207  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  1628059 aataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaat 1628010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 2550145 - 2550204
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| || || | |||| ||||||||||||||||||||||||||||||    
T  2550145 cactactacaataatggcaattggtaacacttgaaaattgtaactaaatcaagaaaaatg 2550204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 16457428 - 16457393
Alignment:
Q  173 caacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16457428 caacaattgaaaattgtaactaaatcaagaaaaatg 16457393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 1613316 - 1613275
Alignment:
Q  167 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  1613316 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatg 1613275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 2943333 - 2943276
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||| |||||||||||||||   ||| |||||| |||||| ||||||||||||||||    
T  2943333 cactactgcaataatgacatttat--acacttgaaatttgtaattaaatcaagaaaaatg 2943276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 28244833 - 28244703
Alignment:
Q  235 gagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaaa 334  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||       |  |||||| |||||| |||||||||| |||    
T  28244833 gagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatactttttttatttattttattttgattattgttgaccaaa 28244734  T
Q  335 atttttatcacgtgaatgaataatgaatggg 365  Q
    |  |||| |||||||||||||||||||||||    
T  28244733 aaatttaacacgtgaatgaataatgaatggg 28244703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 19370031 - 19369972
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19370031 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 19369972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 19448427 - 19448486
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19448427 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 19448486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 19532649 - 19532590
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19532649 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 19532590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 18766896 - 18766954
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaat 207  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18766896 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaat 18766954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 5528721 - 5528781
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  5528721 acactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatg 5528781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 17634593 - 17634533
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17634593 acactcctacaataatgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatg 17634533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 25637617 - 25637679
Alignment:
Q  143 atgtgacactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaa 205  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  25637617 atgtcacactactacaataatgacatttagtaacacttgaaaattgtaactaaattaagaaaa 25637679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 25638783 - 25638845
Alignment:
Q  146 tgacactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||    
T  25638783 tgacactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatg 25638845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 28249196 - 28249137
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||    
T  28249196 cactactacaataatggcacttagtaacacttgaaaattgtaactaaatcaagaaaaatg 28249137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 45356233 - 45356174
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| || || | |||| ||||||||||||||||||||||||||||||    
T  45356233 cactactacaataatggcaattggtaacacttgaaaattgtaactaaatcaagaaaaatg 45356174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 45349411 - 45349374
Alignment:
Q  235 gagagagaaaagtgttttttgagggaagagagagaaaa 272  Q
    |||||||||||||| |||||||||||||||||||||||    
T  45349411 gagagagaaaagtgatttttgagggaagagagagaaaa 45349374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 29553626 - 29553667
Alignment:
Q  167 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  29553626 atttagtaacaattgaaaattgtaaccaaatcaagaaaaatg 29553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 31347346 - 31347387
Alignment:
Q  167 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  31347346 atttagtaacaattgaaaattgtaaccaaatcaagaaaaatg 31347387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0832 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 16 - 146
Alignment:
Q  235 gagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaaa 334  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||   |||||| ||       |  |||||| ||||||||||||||||| |||    
T  16 gagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgactattgttgaccaaa 115  T
Q  335 atttttatcacgtgaatgaataatgaatggg 365  Q
    |  |||| ||| |||||||||||||||||||    
T  116 aaatttaacacttgaatgaataatgaatggg 146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 9238179 - 9238050
Alignment:
Q  235 gagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaaa 334  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||   |||||| ||       |  |||||| ||||||||||||||||| |||    
T  9238179 gagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagtttataatactttttttatttattttattttgactattgttgac-aaa 9238081  T
Q  335 atttttatcacgtgaatgaataatgaatggg 365  Q
    |  |||| |||||||||||||||| ||||||    
T  9238080 aaatttaacacgtgaatgaataataaatggg 9238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 9242605 - 9242549
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaa 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9242605 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaa 9242549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 26225099 - 26225040
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  26225099 cactactacaataatgacatttaataacacttgaaaattgtaactaaatcaagaaaaatg 26225040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 4685524 - 4685465
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||    
T  4685524 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatg 4685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 26205536 - 26205477
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||    
T  26205536 cactactacaataatgacatttagtgacacttgaaaattataactaaatcaagaaaaatg 26205477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 10022100 - 10022162
Alignment:
Q  146 tgacactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||  |||||||    
T  10022100 tgacactgctaaaataatgacatttagtaacaattgaaaattgtaactaaatcagaaaaaatg 10022162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 16170250 - 16170300
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatca 199  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  16170250 cactactgcaataatgacatttagcaacacttgaaaattgtaaccaaatca 16170300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 868 - 812
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaa 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  868 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaa 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 37097462 - 37097402
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  37097462 acactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatg 37097402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 16222763 - 16222816
Alignment:
Q  155 tacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16222763 tacaataatgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatg 16222816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 51758738 - 51758791
Alignment:
Q  155 tacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51758738 tacaataatgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatg 51758791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 15214306 - 15214364
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaat 207  Q
    |||||||||||||| | ||||||| |||| |||||||||| ||||||||||||||||||    
T  15214306 cactactacaataacggcatttagtaacacttgaaaattgcaactaaatcaagaaaaat 15214364  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 15204570 - 15204632
Alignment:
Q  150 actactacaataatgacatttagcaacatttgaaaattgtaac----taaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||  || ||||||||||||||||    ||||||||||||||||    
T  15204570 actactacaataatgacatttaataatatttgaaaattgtaactaactaaatcaagaaaaatg 15204632  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 18308141 - 18308186
Alignment:
Q  163 tgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||    
T  18308141 tgacatctagtaacatttgaaaattgttactaaatcaagaaaaatg 18308186  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 28636907 - 28636941
Alignment:
Q  174 aacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||| |||||||||||||||||||||||||||    
T  28636907 aacatttaaaaattgtaactaaatcaagaaaaatg 28636941  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 13208590 - 13208650
Alignment:
Q  149 cactactacaataatgacatttagcaaca-tttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||| |||| |||||| || | |||||||||||||| ||||| ||||||||||    
T  13208590 cactactacaatgatgatatttagtaatactttgaaaattgtaattaaattaagaaaaatg 13208650  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 1152023 - 1152082
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  1152023 cactactacaataatgacatttagcaacacttgaaaattgtaactaaattaagaaaaatg 1152082  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 1685073 - 1685014
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1685073 cactactataataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatg 1685014  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 47066155 - 47066096
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  47066155 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatg 47066096  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 53300330 - 53300389
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  53300330 cactactacaataatgacatttagtaacacttgaaaattgtaattaaatcaagaaaaatg 53300389  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 43600246 - 43600305
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||| || || | |||| ||||||||||||||||||||||||||||||    
T  43600246 cactactacaataatggcaattggtaacacttgaaaattgtaactaaatcaagaaaaatg 43600305  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 30266982 - 30267041
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  30266982 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatg 30267041  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 44920939 - 44920993
Alignment:
Q  151 ctactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaa 205  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  44920939 ctactacaataatgacatttagtaacacttgaaaattgtaactaaatcaaaaaaa 44920993  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 30553814 - 30553873
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||||||||||||  ||||||||||||| |||||||||||||| | |||||||||||||    
T  30553814 cactactacaataacaacatttagcaacacttgaaaattgtaacaacatcaagaaaaatg 30553873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 31342826 - 31342778
Alignment:
Q  160 taatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||| || |||| |||| ||||||||||||||||||||||||||||||    
T  31342826 taatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatg 31342778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 7718180 - 7718222
Alignment:
Q  165 acatttagcaacatttgaaaattgtaactaaatcaagaaaaat 207  Q
    |||||||| || | |||||||||||||||||||||||||||||    
T  7718180 acatttagtaatacttgaaaattgtaactaaatcaagaaaaat 7718222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 15513656 - 15513705
Alignment:
Q  159 ataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    ||||| |||||||| |||| || |||||||||| ||||||||||||||||    
T  15513656 ataattacatttagtaacaattaaaaattgtaagtaaatcaagaaaaatg 15513705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 40819 - 40763
Alignment:
Q  149 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaa 205  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  40819 cactactacaataatgacatttagcaatacttgaaaattgtaactaaatcaagaaaa 40763  T

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Target: scaffold0838 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 365
Target Start/End: Original strand, 1 - 115
Alignment:
Q  251 ttttgagggaagagagagaaaagtgtttctcaatgtcttataacacnnnnnnnacctattttgttttgactattgttgactaaaatttttatcacgtgaa 350  Q
    ||||||||||||||||||||||||||||||||||   |||||| ||       |  |||||| ||||||||||||||||| ||||  |||| ||| ||||    
T  1 ttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgactattgttgaccaaaaaatttaacacttgaa 100  T
Q  351 tgaataatgaatggg 365  Q
    |||||||||||||||    
T  101 tgaataatgaatggg 115  T

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Target: scaffold0576 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 6677 - 6737
Alignment:
Q  148 acactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 208  Q
    |||||||||||||||||  | |||| |||| || |||||||||||||||||||||||||||    
T  6677 acactactacaataatggtaattagtaacacttaaaaattgtaactaaatcaagaaaaatg 6737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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