View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7025_low_17 (Length: 419)
Name: NF7025_low_17
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 27105499 - 27105103
Alignment:
| Q |
1 |
ttgtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105499 |
ttgtagctggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttag |
27105400 |
T |
|
| Q |
101 |
cgagctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105399 |
cgagctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacg |
27105300 |
T |
|
| Q |
201 |
ttggagacgaattataacgaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatgtag |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27105299 |
ttggagacgaattataaagaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatgtag |
27105200 |
T |
|
| Q |
301 |
attttggtgggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttga |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105199 |
attttggtgggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttga |
27105103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 27098492 - 27098104
Alignment:
| Q |
9 |
ggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcg |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27098492 |
ggtattagacgcaacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgagctcg |
27098393 |
T |
|
| Q |
109 |
atgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttggagac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27098392 |
atgaaaggccactctatgaaattattaagctcatcagagagactaaaaacattgcttccaccactgattttgtcaaaaattcaatcaacacgttggagac |
27098293 |
T |
|
| Q |
209 |
gaattataacgaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatgtagattttggt |
308 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27098292 |
taattataacgaggaatcaaggatggtaagtactggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatgtagattttggt |
27098193 |
T |
|
| Q |
309 |
gggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttga |
397 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
27098192 |
gggaacgaagcagtgaatttagtaccagcaccatgcaacatgtttgcgtcaattgaaattagcatttttacatctcctaataaatttga |
27098104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 405
Target Start/End: Complemental strand, 27045684 - 27045359
Alignment:
| Q |
86 |
tgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaa |
185 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||||||||||||| |||| | || | |||| ||||||| ||||||||| ||||||||| | ||||| |
|
|
| T |
27045684 |
tgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaa |
27045585 |
T |
|
| Q |
186 |
aattcaatc---aacacgttggagacgaattataacgaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggtt |
282 |
Q |
| |
|
|| || ||| |||| ||||||| | |||| | || | || ||| ||| |||||| |||||| ||||||| |||||||| |||||||||| |
|
|
| T |
27045584 |
aactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggtt |
27045485 |
T |
|
| Q |
283 |
ttcttgatgga---gatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttac |
379 |
Q |
| |
|
|| |||||| | || |||||||||| ||| ||||| |||||||||| |||||||||||||||||| |||||||||| ||||| | ||||||| | |
|
|
| T |
27045484 |
ttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagggtgcattttcgc |
27045385 |
T |
|
| Q |
380 |
acctcctaataaatttgatgatgatg |
405 |
Q |
| |
|
| ||||| |||| |||||||||||| |
|
|
| T |
27045384 |
atctcctggtaaacttgatgatgatg |
27045359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 27069771 - 27069602
Alignment:
| Q |
8 |
tggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctc |
107 |
Q |
| |
|
|||||| ||||| || |||| ||||||||| ||||||| || || ||||| |||||||| | |||||||| ||| |||||||| || |||||| |
|
|
| T |
27069771 |
tggtatgagacgtaacttgatggattttgatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctc |
27069672 |
T |
|
| Q |
108 |
gatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgatt |
177 |
Q |
| |
|
||||||| |||||||||||||||| |||| || || | |||||||||||| ||| ||| ||||||||||| |
|
|
| T |
27069671 |
gatgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatatttctttcaccactgatt |
27069602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 27056662 - 27056458
Alignment:
| Q |
8 |
tggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctc |
107 |
Q |
| |
|
||||||||||||||| ||| |||||| ||| |||||||||| || || ||||| ||||| | | |||| ||| ||| |||||||| || |||||| |
|
|
| T |
27056662 |
tggtattagacgcaacttggaggattatgatactttacctaaagggtaatatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctc |
27056563 |
T |
|
| Q |
108 |
gatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttggaga |
207 |
Q |
| |
|
| |||| |||||||||||||||| |||| || || | |||||||||||| ||||||| || |||||| | ||| ||| ||||| ||| | ||||||| |
|
|
| T |
27056562 |
aacgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatattgctttcattgctgattatgtcacaaactcaataaactctttggaga |
27056463 |
T |
|
| Q |
208 |
cgaat |
212 |
Q |
| |
|
||||| |
|
|
| T |
27056462 |
cgaat |
27056458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 27069530 - 27069430
Alignment:
| Q |
243 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccat |
342 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||| ||||||| ||| | || |||||||||| || |||||| |||||||||||||||||||| | |
|
|
| T |
27069530 |
ggtgcagtaacagttttgacagagtggaagcatttgggttttc---atgaaaatatagattttggaggctatgaagttgtgaatttagtaccagcaccgt |
27069434 |
T |
|
| Q |
343 |
gcaa |
346 |
Q |
| |
|
|||| |
|
|
| T |
27069433 |
gcaa |
27069430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 27062463 - 27062421
Alignment:
| Q |
243 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttc |
285 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27062463 |
ggtgcagtaacggttctaacagagtggaaacatttgggttttc |
27062421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University