View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_18 (Length: 401)
Name: NF7025_low_18
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 6861149 - 6860778
Alignment:
| Q |
13 |
aatatgtcaagtatttggtgaaaagtgcatataatttctgcataaacactatcctagatacaactcatcatcatgttaagggtatgtgaagctttctttg |
112 |
Q |
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| T |
6861149 |
aatatgtcaagtatttggtgaaaagtgcatataatttctgcataaacactatcctagatacaactcatcttcatgttaagggtatgtgaagctttctttg |
6861050 |
T |
|
| Q |
113 |
gaacattgtagtgnnnnnnngatgttttctgtatgtaaaaaagatgtgaagcttgcttatgcgttaacaaagatgaccacatcataagctaactctgaat |
212 |
Q |
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| T |
6861049 |
gaacattgtagtgaaaaaaagatgttttctgtatgtaaaaaagatgtgaagcttgcttatgcgttaacaaagatgaccacatcataagctaactctgaat |
6860950 |
T |
|
| Q |
213 |
atatttattgatgtttcaatatgtatcaatttaattattgctaatgaagcatttaactttgctattttaaaagatgaaatgaattttttaaataatttat |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6860949 |
atatttattgatgtttcaatatgtaccaatttaattattgctaatgaagcatttaactttgctattttaaaagatgaaatgaattttttaaataatttat |
6860850 |
T |
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| Q |
313 |
tactagttttgaaacgtcatccaaaactattatcttttaaaatctatagtttttcatacttcataactaacc |
384 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6860849 |
taccagttttgaaacgtcatccaaaactattatcttttaaaatctatagtttttcatacttcataactaacc |
6860778 |
T |
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