View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7025_low_19 (Length: 396)
Name: NF7025_low_19
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 13968601 - 13968976
Alignment:
| Q |
1 |
gagaaacactataaatgaaacacaaacaacacnnnnnnnnngaagaaaggaaagagaggaatcaatcgtattcggagagcctttcatttc-aacgctgct |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13968601 |
gagaaacactataaatgaaacacaaacaacacaaaaaaaaggacgaaaggaaagagaggaatcaatcgtattcggagagcctttcatttctaacgctgct |
13968700 |
T |
|
| Q |
100 |
atatcgcgcaagcttgctattcccttctctctttcctttccatgcaaatttcattactctaacttttcatcttccaattttacgtaacaatcataaaaat |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
13968701 |
atatcgcgcaagcttgctattctcttctctctttcctttccatgcaaatttcattactctaacttttcatcttccaatttcacgtaaaattcataaaaat |
13968800 |
T |
|
| Q |
200 |
atatcaatttgatattgtaatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagtttatgttg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13968801 |
atatcaatttgatattgtaatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagtttatgttg |
13968900 |
T |
|
| Q |
300 |
tttttgtcctgcattgcgggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccct |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13968901 |
tttttgtcctgcattgcgggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccct |
13968976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University