View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_21 (Length: 387)
Name: NF7025_low_21
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 50 - 374
Target Start/End: Complemental strand, 52767762 - 52767438
Alignment:
| Q |
50 |
aaattcttcgtttgatgagtgtgaaagaagatttggtattatgaggcgtagtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgt |
149 |
Q |
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| T |
52767762 |
aaattcttcgtttgatgagtgtgaaagaagatttggtattatgaggcgtagtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgt |
52767663 |
T |
|
| Q |
150 |
atacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgac |
249 |
Q |
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| T |
52767662 |
atacatctaagatgcagaacttgttgtaaaagtcgagggtttcagtgtcaaacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgac |
52767563 |
T |
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| Q |
250 |
aacaacatctctctgcgttaccgtttcgtcgtcgagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctttccc |
349 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52767562 |
aacaacatctctctgcgttaccgtttcgtcgtagagatcatgtagacaattacaaacgacacacagaaattaatcaaggtgcaacctctcttcctttccc |
52767463 |
T |
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| Q |
350 |
tcaaccacccatccctaccacaggt |
374 |
Q |
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| T |
52767462 |
tcaaccacccatccctaccacaggt |
52767438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 7418666 - 7418510
Alignment:
| Q |
100 |
gtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtca |
199 |
Q |
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| T |
7418666 |
gtggtggaatgaactgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtca |
7418567 |
T |
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| Q |
200 |
aacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
256 |
Q |
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| T |
7418566 |
aactcatgtgaaaagtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
7418510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 32482965 - 32483108
Alignment:
| Q |
113 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaag |
212 |
Q |
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| T |
32482965 |
ttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggttttcagtgtcaaactcatgttaaa |
32483064 |
T |
|
| Q |
213 |
agtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
256 |
Q |
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| T |
32483065 |
agcacttgggttcctgcttctagacgccgtgaacgtcaacaaca |
32483108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 13800522 - 13800584
Alignment:
| Q |
283 |
gagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctt |
345 |
Q |
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| T |
13800522 |
gagatcatggagacaattacaaacgacacacataaattaatcaaggtgaaacctctcttcctt |
13800584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 8101881 - 8102002
Alignment:
| Q |
113 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaag |
212 |
Q |
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|||||| || ||||| || ||||| |||||||||||| ||| | ||||| |||||||||||||| ||| |||| ||| | |||||||| ||||||||| |
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| T |
8101881 |
ttgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagtagaggttttgattgtcaaactcatgttaag |
8101980 |
T |
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| Q |
213 |
agtacttgggttcccgctgcta |
234 |
Q |
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|||||||||||||| ||||||| |
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| T |
8101981 |
agtacttgggttcctgctgcta |
8102002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 39019486 - 39019366
Alignment:
| Q |
114 |
tgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaaga |
213 |
Q |
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| T |
39019486 |
tgtcaagattgtggaaaccaagcaaagaaagattgtagtaatagaaggtgtagaacttgttgtaaaagtagaggttttgattgccctactcatgttaaga |
39019387 |
T |
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| Q |
214 |
gtacttgggttcccgctgcta |
234 |
Q |
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|||||||||| || ||||||| |
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| T |
39019386 |
gtacttgggtacctgctgcta |
39019366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 25570259 - 25570321
Alignment:
| Q |
283 |
gagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctt |
345 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||| |
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| T |
25570259 |
gagatcatggagacaattacaaacgacacacataaattaattaaggtgaaacctctcttcctt |
25570321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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