View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_22 (Length: 369)
Name: NF7025_low_22
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 38566802 - 38567149
Alignment:
| Q |
10 |
agaacctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
109 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
38566802 |
agaacctggggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatctcttcaatcgttgctccatctttaccatatgaaatgt |
38566901 |
T |
|
| Q |
110 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38566902 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
38567001 |
T |
|
| Q |
210 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgtt |
309 |
Q |
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| T |
38567002 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgtt |
38567101 |
T |
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| Q |
310 |
ccgctcggtatatgaagagagaatccattaaatatcagctccacaggt |
357 |
Q |
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| T |
38567102 |
ccgctcggtatatgaagagagaatccattaaatatcagctcctcaggt |
38567149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 38525677 - 38526024
Alignment:
| Q |
10 |
agaacctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
109 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
38525677 |
agaacctgtggaagtttatcaatgaatttggcggcgtttgcaagttcggatgcagatcttatttcttcaattgttgctccatctttaccatatgcaatgt |
38525776 |
T |
|
| Q |
110 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
209 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
38525777 |
tatccttaatgctggatgcaaataacactggctcctggctgacaagaccaattttccctctgatccacctaagctgaagttctttcatgttaattccatc |
38525876 |
T |
|
| Q |
210 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgtt |
309 |
Q |
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|||||| |||||||| |||||||||||||||||||| ||||||||| | |||| ||| |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
38525877 |
gataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataactgtggactttccacttccactttgtccaaccaatgccgcggttgtt |
38525976 |
T |
|
| Q |
310 |
ccgctcggtatatgaagagagaatccattaaatatcagctccacaggt |
357 |
Q |
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||||| | ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
38525977 |
ccgcttgatatatgaagagagaatccattgaatatcagctcctcaggt |
38526024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 51199755 - 51199472
Alignment:
| Q |
13 |
acctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgttat |
112 |
Q |
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||||| || |||||||| || ||||||||||| || ||||| || | ||||| ||| ||||||||| || || ||||| || || |||| |||||| | |
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| T |
51199755 |
acctgaggaagtttatctataaatttggcagcattagcaagctcggctgcagctctgatttcttcatcagtagcaccatccttgccatatgcaatgttct |
51199656 |
T |
|
| Q |
113 |
ccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatcgat |
212 |
Q |
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| T |
51199655 |
ctttaatgctgcaagtaaagagaacaggttcctggctgactaggcctattttctgtctgatccatttcagttgaaattctttgaggttgacaccgtcaat |
51199556 |
T |
|
| Q |
213 |
aagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
296 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||| |||| ||| || ||| || |||||||| |||||||| || ||||| |
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| T |
51199555 |
gagaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaa |
51199472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 51145548 - 51145432
Alignment:
| Q |
231 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
329 |
Q |
| |
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|||||||||||||||||||| |||| | | || ||| || || |||||||||||||| || ||||| |||| || || ||||| |||| ||| |||||| |
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| T |
51145548 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51145450 |
T |
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| Q |
330 |
gaatccattaaatatcag |
347 |
Q |
| |
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|||||||| |||||||| |
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| T |
51145449 |
aaatccattgaatatcag |
51145432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 51156689 - 51156573
Alignment:
| Q |
231 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
329 |
Q |
| |
|
|||||||||||||||||||| |||| | | || ||| || || |||||||||||||| || ||||| |||| || || ||||| |||| ||| |||||| |
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| T |
51156689 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51156591 |
T |
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| Q |
330 |
gaatccattaaatatcag |
347 |
Q |
| |
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|||||||| |||||||| |
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| T |
51156590 |
aaatccattgaatatcag |
51156573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 51212687 - 51212627
Alignment:
| Q |
227 |
cctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttg |
287 |
Q |
| |
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||||||||||||| |||||||||| |||||| || | ||| || |||||||| |||||||| |
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|
| T |
51212687 |
cctgtggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttg |
51212627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 49737314 - 49737396
Alignment:
| Q |
214 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
296 |
Q |
| |
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|||| |||||| ||||||||||||| |||||||||| |||| | |||| ||||| || ||||| ||||||||||| ||||| |
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| T |
49737314 |
agaatttcaccaccctgtggatcataaaatctctctatcaaactaataaccgtcgatttcccactcccactttgtcctaccaa |
49737396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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