View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_24 (Length: 365)
Name: NF7025_low_24
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 37134838 - 37134512
Alignment:
| Q |
1 |
cactaattcaataatgcataaataaaatgaatgtgaagtaactttcctttgttttaattattaatgtgtgttcatcctcattgtagtatttcatagtatt |
100 |
Q |
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| T |
37134838 |
cactaattcaataatgcataaataaaatgaatgtgaagtaattttcctttgttttaattattaatgtgtgttcatcctcattgtagtatttcatattatt |
37134739 |
T |
|
| Q |
101 |
caattattcactcaacctcactgtatgttgaaagagtgtactataaatttcataatccattaattatatttttgccatcaataattaactatcgtgtttg |
200 |
Q |
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| T |
37134738 |
ccattattcactcaacctcactgtatgttgaaagagtgtactataaatttcataatccattaattatatttttgccatcaataattaactaacgtgtttg |
37134639 |
T |
|
| Q |
201 |
ccaaatgcctacaatggctagtcgtttgatctataatatagctagcaagaatccatgagtcatagcggtcaattgttttgcttacctcgttggcaacgaa |
300 |
Q |
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| T |
37134638 |
ccaaatgcctacaatggctagtcgtttgatctataatatagctagcaagaatccatgagtcatagcggttaattgttttgcttacctcgttggcaacgaa |
37134539 |
T |
|
| Q |
301 |
tgattcatatattattcatgttacacg |
327 |
Q |
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| T |
37134538 |
tgattcatatattattcatgttacacg |
37134512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 37138835 - 37138787
Alignment:
| Q |
47 |
ctttgttttaattattaatgtgtgttcatcctcattgtagtatttcata |
95 |
Q |
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|||||||||| ||||||| ||||||||||||| |||||| |||||||| |
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| T |
37138835 |
ctttgttttagttattaaggtgtgttcatcctgattgtaacatttcata |
37138787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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