View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_25 (Length: 353)
Name: NF7025_low_25
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 37134831 - 37135173
Alignment:
| Q |
1 |
aattagtgcatcttagaaaggnnnnnnngagaggttattttgcctgttcttgacagtctactgagaactgaatttaatacatcaagctgaatattgataa |
100 |
Q |
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| T |
37134831 |
aattagtgcatcttagaaaggaaaaaaagagaggttattttgcctgttcttgacagtctactgagaactgaatttaatacatcaagctgaatattgataa |
37134930 |
T |
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| Q |
101 |
cttcatttgaggttgtttctttcggacataatatcacacacagaaaaccgtttggaaagaatgcaatgaaagcatatcaagactttctagcacaggtcat |
200 |
Q |
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| T |
37134931 |
cttcatttgaggttgtttctttcggacataatatcacacacagaaaaccgtttggaaagaatgcaatgaaagcatatcaagactttctagcacaggtcat |
37135030 |
T |
|
| Q |
201 |
gaggatctcttatgaagtaacggatcacggatgacttgaggctcaaagtctggtttcacatacttagcaagtgtctccgcatacaactcgtatcgtgcag |
300 |
Q |
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| T |
37135031 |
gaggatctcttatgaagtaacggatcacggatgacttgaggctcaaagtctggtttcacatacttagcaagtgtctccgcatacaactcgtatcgcgcag |
37135130 |
T |
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| Q |
301 |
tcattctgaaacaccacttgtctttaaactgcctacacaggtt |
343 |
Q |
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| T |
37135131 |
tcattctgaaacaccacttgtctttaaactgcctacacaggtt |
37135173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 339
Target Start/End: Original strand, 37139034 - 37139191
Alignment:
| Q |
182 |
actttctagcacaggtcatgaggatctcttatgaagtaacggatcacggatgacttgaggctcaaagtctggtttcacatacttagcaagtgtctccgca |
281 |
Q |
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| T |
37139034 |
actttctagcacaggtcattagcatctcttatgaagtaaggggtcacggatgacttgaggctcaaattctggtttcacatattgagcaagtgtctccaca |
37139133 |
T |
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| Q |
282 |
tacaactcgtatcgtgcagtcattctgaaacaccacttgtctttaaactgcctacaca |
339 |
Q |
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| T |
37139134 |
tacaactcgtatcgtgcagtcattcggaagccccatttgtctttatattgcctgcaca |
37139191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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