View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_26 (Length: 342)
Name: NF7025_low_26
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 20888002 - 20887693
Alignment:
| Q |
17 |
aggtatttcatcattttggtggattttgaatgtttaggtttgagttgtgttttagcgaatcattgggcagtggcttttgttcttgaatggaatattgaat |
116 |
Q |
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| T |
20888002 |
aggtatttcatcattttggtggattttgtatgtttaggtttgagttgtgttttagcgaatcattgggcagtggcttttgttcttgaatggaatattgaat |
20887903 |
T |
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| Q |
117 |
gttcttctagatggattgtgtggcaagattgtttactctaatacaattgatgcttgtcttttgtactttgtagtatgttgtttcggtatagattttaagg |
216 |
Q |
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| T |
20887902 |
gttcttctagatggattgtgtggcaagattgtttactctaatacaattgatgcttgtcttttgtactttgcagtatgttgtttcggtatagattttaagg |
20887803 |
T |
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| Q |
217 |
aatataatccccctggtgtcaatatagcaacatgataggactctgggtttgagcctaagcccaacaactaagatgaatagggaagttagttgttgacctg |
316 |
Q |
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| T |
20887802 |
aatataatccccctggtgtcaatatagcaacatcataggactctgggtttgagcctaagcccaacaactaagatgactagggaagttagttgctgacctg |
20887703 |
T |
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| Q |
317 |
gcattagagc |
326 |
Q |
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| T |
20887702 |
gcattagagc |
20887693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 54806849 - 54806905
Alignment:
| Q |
249 |
tgataggactctgggtttgagcctaagcccaacaactaagatgaatagggaagttag |
305 |
Q |
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| T |
54806849 |
tgataggactctgggttcgggcctaagcccaacaactacaatgaacagggaagttag |
54806905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 6479089 - 6479033
Alignment:
| Q |
269 |
gcctaagcccaacaactaagatgaatagggaagttagttgttgacctggcattagag |
325 |
Q |
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| T |
6479089 |
gcctaagcccaacaactaagccgaatagggaagttagttactgatgtggcattagag |
6479033 |
T |
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