View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_27 (Length: 336)
Name: NF7025_low_27
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 24142672 - 24142997
Alignment:
| Q |
1 |
ctacattgaacatttcctgtgtgaactcactactatcaattcaaaatgcaacatatcatcaaaataacataagaattttattgttgaaacatagcataat |
100 |
Q |
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| T |
24142672 |
ctacattgaacatttcctgtgtgaactcactactatcaattcaaaatgcaacatatcatcaaaataacataagaattttattgttgaaacatagcattat |
24142771 |
T |
|
| Q |
101 |
cgttgtgtttataaagtgtataggcaaaaattgatttatgaattattaaacgcttaaataagctattatttcctttaatatacatgctttgagaagagaa |
200 |
Q |
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| T |
24142772 |
cgttgtgtatataaagtgtataggcaaaaattgatttatgaattattagacgcttaaataagctattatttcctttaatatacatgctttgagaagagaa |
24142871 |
T |
|
| Q |
201 |
tattataggtctaaaaagttacttatgctgaatctcaagatcatgatgacttgatgattcaggcatggcaaattgagatacacaaatgtagaaagttcac |
300 |
Q |
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| T |
24142872 |
tattataggtctaaaaagttacttatgctgaatctcaagatcatgatgacttgatgattcaggcatggcaaattgagatgcacaaatgtagaaagttgac |
24142971 |
T |
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| Q |
301 |
aaactcattcacaatgttcatctcac |
326 |
Q |
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| T |
24142972 |
aaactcattcacaatgttcatctcac |
24142997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 24149929 - 24149978
Alignment:
| Q |
277 |
gatacacaaatgtagaaagttcacaaactcattcacaatgttcatctcac |
326 |
Q |
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| T |
24149929 |
gatacacaaatgtagaaagttcacaaactcattcacattgttcatttcac |
24149978 |
T |
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