View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_28 (Length: 314)
Name: NF7025_low_28
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 39280386 - 39280691
Alignment:
| Q |
1 |
acaatacattacttcaatttctaacatcacaatgctatatacacttgcagtgcaagttaagatatcaatacaagagaatcaggcnnnnnnncaatatgta |
100 |
Q |
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| T |
39280386 |
acaatccattacttcaattactaacatcacaatgctatatacacttgcagtgcaagttaagatatcaatacaagagaatcaggcaaaaaaacaatatgta |
39280485 |
T |
|
| Q |
101 |
ttatactactattttcatatttacaagaaccttgaagaaggaaacctaatggaatcaacagacctaagaactctgtcatcaaaccgatcagactcggttc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280486 |
ttatactactatttacatatttacaagaaccttgaagaaggaaacctaatggaatcaacagacctaagaactctgtcatcaaaccgatcagactcggttc |
39280585 |
T |
|
| Q |
201 |
ttctgtcttttgtcactgtcctgttaagcttcccttcttctcgatacaccttcatcctcccaaccttttccttcaattctctcaccaaatcccagaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280586 |
ttctgtcttttgtcactgtcctgttaagcttcccttcttctctatacaccttcatcctcccaaccttttccttcaattctctcaccaaatcccagaattt |
39280685 |
T |
|
| Q |
301 |
cttctc |
306 |
Q |
| |
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|||||| |
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|
| T |
39280686 |
cttctc |
39280691 |
T |
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