View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_29 (Length: 313)
Name: NF7025_low_29
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 43991803 - 43992098
Alignment:
| Q |
18 |
atttcttttaaaaagaagctagaaaatgagcgtgtgaacacata---caagaaaaaattgattgttcnnnnnnnnnnnnnngaatcgtcctgcacggtga |
114 |
Q |
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| T |
43991803 |
atttcttttaaaaagaagctagaaaatgagcgtgtgaacacatagtacaagaaaaaattgattgttcaaaaaaagtaaaaagaatcgtcctgcacggtga |
43991902 |
T |
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| Q |
115 |
acggaactgcacccattttaataacctgttcctggactgagcaaacattttaaagcacagttcaataactgaacttttttggaaataggttggtgaactg |
214 |
Q |
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| T |
43991903 |
acggaactgcacccattttaataacctgttcctggactgagcaaacattttaaagcacagttcaataacagaacttttttggaaataggttggtgaactg |
43992002 |
T |
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| Q |
215 |
tagtgaatggaccgacattcttcaatttggacactctcattcatctttgttagcttctcgaatttgacgttcatgatcttggcttcttctcactcg |
310 |
Q |
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| T |
43992003 |
tagtgaatggaccgacattcttcaatttggacactctcattcatctttgttagcttctcgaatttgacgttcatgatcttggctccttctctctcg |
43992098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 20797541 - 20797656
Alignment:
| Q |
142 |
gttcctggactgagcaaacatttt-aaagcacagttcaataactgaacttttttgg-aaataggttggtgaactgtagtgaa-tggaccgacattcttca |
238 |
Q |
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| T |
20797541 |
gttcctggactgaacaagcatttttaaagcacagttcagtaactgaacttttttggaaaataggttggtgaactgtagtgaactgaaccgacattcttca |
20797640 |
T |
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| Q |
239 |
atttggacactctcat |
254 |
Q |
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| T |
20797641 |
atttggacactttcat |
20797656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 20797482 - 20797522
Alignment:
| Q |
97 |
aatcgtcctgcacggtgaacggaactgcacccattttaata |
137 |
Q |
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| T |
20797482 |
aatcgtcctgcacagtgaactgaacggcacccattttaata |
20797522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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