View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_3 (Length: 724)
Name: NF7025_low_3
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 265 - 709
Target Start/End: Original strand, 2443331 - 2443787
Alignment:
| Q |
265 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
364 |
Q |
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| T |
2443331 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
2443430 |
T |
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| Q |
365 |
ataacacttttatcccatc------------aatctccctcacttggttgcatcaaatcctttcgttccgcaccctgcaaatcaccaaaagcttggaatg |
452 |
Q |
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| T |
2443431 |
ataacacttttatcccatcaattacttcatcaatctccctcacttggttgcatcaaatcctttcgttcctcaccctgcaaatcaccaaaagcttggaatg |
2443530 |
T |
|
| Q |
453 |
ccaaatcaaccacgcacctttcagattttcttctcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcggggagtaacaaaattaaaatc |
552 |
Q |
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| T |
2443531 |
ccaaatcaaccacgcacctttcagattttcttctcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcggggagtaacaaaattaaaatc |
2443630 |
T |
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| Q |
553 |
catccatctcaaaacgttttgacacaccatatcttccattttgccacacaacaaacaatttaagaatgcgttgtgatccaaaacgtttccaaatgcaaga |
652 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443631 |
catccatctcaaaacgttttgaaacaccatatcttccattttgccacacaacagacaatttaagaatgcgttgtgatccaaaacgtttccaaatgcaaga |
2443730 |
T |
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| Q |
653 |
tttgaacacgttggaatacagtctagaagaagagtccaagaaaaaaccacaactttt |
709 |
Q |
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| T |
2443731 |
tttgaacacgttggaatacagtctagaagaagagtccaagaaaaaaccacaactttt |
2443787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 9603534 - 9603400
Alignment:
| Q |
48 |
ttaataaaatgtgttcctcgcacatgacgcacaatggaaaccaacacagacctacacaatgccatatataagcgacatcactattagcggaacacagcct |
147 |
Q |
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||||||||| ||||| |||||||| ||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||| | ||||| ||||| |
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| T |
9603534 |
ttaataaaacgtgtttctcgcacaagacgcgcaatggaaaccatcacagacctagacaatgcagtatataagcgacatcactattatctgaacatagcct |
9603435 |
T |
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| Q |
148 |
accattatcaactcaagtaccgaaacagaaatgaa |
182 |
Q |
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| T |
9603434 |
accgccaataactcaagcaccgaaacagaaatgaa |
9603400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 624 - 709
Target Start/End: Original strand, 12220501 - 12220586
Alignment:
| Q |
624 |
tgtgatccaaaacgtttccaaatgcaagatttgaacacgttggaatacagtctagaagaagagtccaagaaaaaaccacaactttt |
709 |
Q |
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|||||||||||||||||||||||||||||||| | | |||||||| | |||||||||||||||||||||||| | ||||||||| |
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| T |
12220501 |
tgtgatccaaaacgtttccaaatgcaagatttaaccgagttggaatttaatctagaagaagagtccaagaaaaagctacaactttt |
12220586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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