View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_36 (Length: 274)
Name: NF7025_low_36
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 827933 - 827695
Alignment:
| Q |
21 |
tttagctcgagaacatgtaaataagcaatgaattgtagattatatacttgctttgcaaacagggcaagtggctgaccttgccactttatcatgcatgagg |
120 |
Q |
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| T |
827933 |
tttagctcgagaacatgtaaataagcaatgaattgtagattatatacttgctttgcaaacaggacaagtggctgaccttgccactttatcatgcatgagg |
827834 |
T |
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| Q |
121 |
acctttagggatacccgagtcatcagaaatgcatgtgtaaactctttgagacatagattctaaaagctcaatatcaaaggcactcttatatcacaagcat |
220 |
Q |
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| T |
827833 |
acctttagggatacccgagtcatcagaaatgcatgtgtaaactctttgagacatagattctaaaagctcaaaatcaaaggcactcttatatcacaagcat |
827734 |
T |
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| Q |
221 |
tagtagcgtttgcaatcataaacatctaagtgattcctg |
259 |
Q |
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| T |
827733 |
tagtagcgtttgcaatcataaacatctaagtgattcctg |
827695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 834625 - 834443
Alignment:
| Q |
21 |
tttagctcgagaacatgta----aataagcaatgaattgtagattatatacttgctttgcaaacagggcaagtggctgaccttgccactttatcatgcat |
116 |
Q |
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| T |
834625 |
tttagctcgagaacatgtatgtaaataaacaatgaattgtagattatatatttgctttgcaaacaggacaagtggctgaccttgc------------aat |
834538 |
T |
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| Q |
117 |
gaggacctttagggatacccgag------tcatcagaaatgcatgtgtaaactctttgagacatagattctaaaagctcaatatcaaaggcactc |
205 |
Q |
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| T |
834537 |
aaggacatttagggatacccaagataacataatcaggaatgcatgtgtaaaccctttgagacagagactttaaaagctcaaaatcaaaggcactc |
834443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 834276 - 834224
Alignment:
| Q |
207 |
tatatcacaagcattagtagcgtttgcaatcataaacatctaagtgattcctg |
259 |
Q |
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| T |
834276 |
tatatcacaatcatcagtagcctttgcaataataaacatgtaagtgattcctg |
834224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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