View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_4 (Length: 712)
Name: NF7025_low_4
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_4 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 620
Target Start/End: Complemental strand, 4108646 - 4108064
Alignment:
| Q |
14 |
cctgtgttggtagacaaattttgcaccaaatataaatatttgatggtattgtaggcaacatctatgatttgattaatgtcgattaaaaagatatcttttt |
113 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4108646 |
cctgtgttggtagacatgtttcgcaccaaatataaatatttgatggtattataggcaacatctatgatttgattaatgtcgattaaaaagatatctgttt |
4108547 |
T |
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| Q |
114 |
gctttaaatattttacaagctaaggatgaacgctgatttcttttggcttttattgtagaagaatgtccatgaagaggatgttagtttgggtgatgatgtt |
213 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4108546 |
gctttaagtattttacaagctaaggatcaacgctgatttcttttgacttttattgtagaagaatgtccatgaagaggatgttagtttgggtgatgatgtt |
4108447 |
T |
|
| Q |
214 |
gctgatggtgatgttctcaaatcctctgacaatgttgtt--caggtatatactgttaatgtatttattgattatgttaagtgatgtgatcctataacatt |
311 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
4108446 |
gctgatggtgatgttctcaaatcctctgacactgttgttaacaggtatatactgttaatg----tattgattgtgttaagtgatgtgatcctataacatt |
4108351 |
T |
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| Q |
312 |
gatgtataagttaaagtagaaatgttctctctttcaggatttgttggtttcttcagtggaatctatatatctatgaaaggaattgtagatatttagaagg |
411 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
4108350 |
gatgtataagctaaagtagaaatgttctctctttcaggatttgttggtttcttcagtggaatctatatatcaatgaaaggaattgtagat-tttagaagg |
4108252 |
T |
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| Q |
412 |
tgtttatgaatactatatcgtgtttatgaatactatatgcccacaaaatgtatagatacgatataagcgtttataagggctttttatttcataagatact |
511 |
Q |
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| T |
4108251 |
tgtttatgactac--------------------tatatgcccacaaaatgtatagatacgatataagggtttataagggc-ttttatttcataagatact |
4108173 |
T |
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| Q |
512 |
ttatgaaatactgtatgaggtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattgatgtaggaacattgatgaaataa |
611 |
Q |
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| T |
4108172 |
ttatgaaatactgtatgaggtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattcatgtaggaacattgatgaaataa |
4108073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 642 - 712
Target Start/End: Complemental strand, 34779519 - 34779449
Alignment:
| Q |
642 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcaga |
712 |
Q |
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| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcaga |
34779449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 8994709 - 8994904
Alignment:
| Q |
14 |
cctgtgttggtagacaaattttgcaccaaatataaatatttgatggtattgtaggcaacatctatgatttgattaatgtcgattaaaaagat--atcttt |
111 |
Q |
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| T |
8994709 |
cctgtgttggtagaaaagtttcagaccaaatataaagatttgatggtattataggctgcatctataatttt-ttaatgttgatttaaaaaatccat-ttt |
8994806 |
T |
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| Q |
112 |
ttgctttaaatattttacaagcta-aggatgaacgctgatttcttttggcttttattgtagaagaatgtccatgaagaggatgttagtttgggtgatg |
208 |
Q |
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||| |||| ||| | |||| | ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8994807 |
ttgatttacgtataattcaagtaataggattaacgctgatttctactgacttttattgtagaagaatgtccatgaagaggatgttagtttggttgatg |
8994904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 8996697 - 8996773
Alignment:
| Q |
354 |
gttggtttcttcagtggaatctatatatctatgaaaggaattgtagatatttag-aaggtgtttatgaatactatat |
429 |
Q |
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| T |
8996697 |
gttggtttctgctgtggaatctacatatctatgaaaggaattgtagatatttagaaaggtgtttgtgaatattatat |
8996773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 8996136 - 8996214
Alignment:
| Q |
276 |
tattgattatgttaagtgatgtgatcctataacattgatgtataagttaaagtagaaatgttctctctttcaggatttg |
354 |
Q |
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| T |
8996136 |
tattgattgtgttaagtgacgttatgctataacattgacttataagctaaggtagaaatgttctctctttcaggatttg |
8996214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 642 - 712
Target Start/End: Original strand, 34682858 - 34682928
Alignment:
| Q |
642 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcaga |
712 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||| |
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| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacaga |
34682928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 21413542 - 21413416
Alignment:
| Q |
137 |
ggatgaacgctgatttcttttggcttttattgtagaagaatgtccatgaagaggatgttagtttgggtgatgatgttgctgatggtgatgttctcaaatc |
236 |
Q |
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|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| | |||||||| || ||||||||| |
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| T |
21413542 |
ggattaacgctgatttctactaacttttattgtagaagaatgtccatgaagaggatgttaatttggttgatggtgtcgttgatggtggtgctctcaaatc |
21413443 |
T |
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| Q |
237 |
ctctgacaatgttgttcaggtatatac |
263 |
Q |
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| T |
21413442 |
atccgacactattgttcaggtatatac |
21413416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 355 - 429
Target Start/End: Complemental strand, 21412063 - 21411988
Alignment:
| Q |
355 |
ttggtttcttcagtggaatctatatatctatgaaagga-attgtagatatttagaaggtgtttatgaatactatat |
429 |
Q |
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||||||||| | |||||||||| ||||||||| | | |||||||||||||||||||||||| |||||||||||| |
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| T |
21412063 |
ttggtttctgctgtggaatctacatatctatgtattaagattgtagatatttagaaggtgtttgtgaatactatat |
21411988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 21412601 - 21412553
Alignment:
| Q |
306 |
aacattgatgtataagttaaagtagaaatgttctctctttcaggatttg |
354 |
Q |
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| T |
21412601 |
aacattgacttataagctaaggtagaaatgttctctctttcaggatttg |
21412553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 49712250 - 49712174
Alignment:
| Q |
160 |
cttttattgtagaagaatgtccatgaagaggatgttagtttgggtgatgatgttgctgatggtgatgttctcaaatc |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| || ||||||||| |
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| T |
49712250 |
cttttattgtagaagaatgtccatgaagaggatgttagtttggttgatggtgtcgttgatggtggtgctctcaaatc |
49712174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 20535 - 20459
Alignment:
| Q |
276 |
tattgattatgttaagtgatgtgatcctataacattgatgtataagttaaagtagaaatgttctctctttcaggatttg |
354 |
Q |
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|||||||| |||||||||| || || ||||||| ||| |||||| ||| |||||||||||||||||||||||||||| |
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| T |
20535 |
tattgattgtgttaagtgacgttatgctataac--tgacttataagctaaggtagaaatgttctctctttcaggatttg |
20459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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