View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_43 (Length: 239)
Name: NF7025_low_43
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48730130 - 48730352
Alignment:
| Q |
1 |
atctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggtttt |
100 |
Q |
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| T |
48730130 |
atctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggtttt |
48730229 |
T |
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| Q |
101 |
agtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgt |
200 |
Q |
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| T |
48730230 |
agtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgt |
48730329 |
T |
|
| Q |
201 |
aaggatccatttgaatcagtttg |
223 |
Q |
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||||||| ||||||||||||||| |
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| T |
48730330 |
aaggatcgatttgaatcagtttg |
48730352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 4819091 - 4818941
Alignment:
| Q |
32 |
ttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtat |
131 |
Q |
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| T |
4819091 |
ttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagat |
4818992 |
T |
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| Q |
132 |
gtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
182 |
Q |
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| T |
4818991 |
gacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 31040743 - 31040851
Alignment:
| Q |
74 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg |
173 |
Q |
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||||| ||||| |||||||||||||| | ||||||||| ||||||||||| |||||| || |||||| ||||||| |||||| |||||||||| |
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| T |
31040743 |
tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatg |
31040842 |
T |
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| Q |
174 |
gtattaaat |
182 |
Q |
| |
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| T |
31040843 |
gaattaaat |
31040851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 31075952 - 31076001
Alignment:
| Q |
74 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
123 |
Q |
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||||| ||| |||||||||||||||| | ||||||||| ||||||||||| |
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| T |
31075952 |
tttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa |
31076001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 28865196 - 28865156
Alignment:
| Q |
142 |
tgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
182 |
Q |
| |
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|
| T |
28865196 |
tgcagcgatatgtaaaggagtttcaacaaatggtattaaat |
28865156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 30648044 - 30648008
Alignment:
| Q |
142 |
tgcagcaatatgcaaaggagtatcaacaaatggtatt |
178 |
Q |
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|||||||||||| |||||||| ||||||||||||||| |
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| T |
30648044 |
tgcagcaatatgtaaaggagtttcaacaaatggtatt |
30648008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 26087519 - 26087599
Alignment:
| Q |
43 |
agcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
123 |
Q |
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| T |
26087519 |
agcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaa |
26087599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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