View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7025_low_53 (Length: 204)

Name: NF7025_low_53
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7025_low_53
NF7025_low_53
[»] chr6 (2 HSPs)
chr6 (13-201)||(11320734-11320919)
chr6 (120-180)||(25397913-25397973)
[»] chr4 (5 HSPs)
chr4 (36-180)||(24857879-24858018)
chr4 (47-178)||(6407936-6408062)
chr4 (122-182)||(22746495-22746555)
chr4 (122-180)||(22748884-22748942)
chr4 (15-180)||(12753695-12753855)
[»] chr2 (5 HSPs)
chr2 (79-180)||(18845568-18845665)
chr2 (77-180)||(16243187-16243286)
chr2 (77-180)||(16423575-16423674)
chr2 (115-181)||(18557638-18557704)
chr2 (121-179)||(18845469-18845527)
[»] chr1 (3 HSPs)
chr1 (120-180)||(27317601-27317661)
chr1 (115-180)||(145484-145549)
chr1 (20-180)||(3850415-3850570)
[»] chr3 (1 HSPs)
chr3 (115-180)||(15636386-15636451)
[»] chr5 (2 HSPs)
chr5 (82-173)||(11713277-11713364)
chr5 (148-184)||(18080079-18080115)
[»] chr7 (4 HSPs)
chr7 (80-180)||(8049036-8049132)
chr7 (115-181)||(34322347-34322413)
chr7 (114-180)||(34326296-34326362)
chr7 (22-107)||(19203713-19203797)
[»] chr8 (1 HSPs)
chr8 (115-180)||(22274726-22274791)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 11320919 - 11320734
Alignment:
Q  13 attattctacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcacta 112  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  11320919 attatactactttaaaagtatatctttaaattgcaatataagtcctatttataggatact---gaggtaaatgaataatcacgttacaatgcactcacta 11320823  T
Q  113 gttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacattcttctgatgatgtccatct 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||    
T  11320822 gttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacattcttttatggatgtccatct 11320734  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 25397973 - 25397913
Alignment:
Q  120 ggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    ||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  25397973 ggagttacaagcatgtggaaggataatggatggacatccactaatagatatattcataaca 25397913  T

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Target: chr4 (Bit Score: 64; Significance: 3e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 24857879 - 24858018
Alignment:
Q  36 ctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagt 135  Q
    ||||| |||| | ||||| |||||||||||||| |||||  |||||||||||||| ||| ||||||| |||| ||| ||     | ||||||||||| ||    
T  24857879 ctttacattgcattataaatcctatttataggacacaaat-aggtaaatgaataagcacattacaatccacttactggtg----gaagttacaagtatgt 24857973  T
Q  136 ggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24857974 ggaaagttaatggatggacatccactaattgatatattcataaca 24858018  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 6408062 - 6407936
Alignment:
Q  47 aatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaat 146  Q
    |||||| ||||||||||||||| |||||  ||||| |||||||| ||| ||||||| ||||   |||| ||| ||||||||||| | |||||| ||||||    
T  6408062 aatataggtcctatttataggacacaaat-aggtagatgaataaccactttacaatccact---tagt-agtgggagttacaaggatgtggaaggttaat 6407968  T
Q  147 ggatggacatccactaattgatatattcataa 178  Q
     | |||||| |||| ||| |||||||||||||    
T  6407967 tgttggacacccacaaatagatatattcataa 6407936  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 22746555 - 22746495
Alignment:
Q  122 agttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacatt 182  Q
    ||||||||| | |||||| | ||||||||||||||||||| || |||||||||||||||||    
T  22746555 agttacaagcatgtggaagggtaatggatggacatccactgatagatatattcataacatt 22746495  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 22748942 - 22748884
Alignment:
Q  122 agttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    ||||||||| | ||| || | |||||||||||||||||||||| |||||||||||||||    
T  22748942 agttacaagcatgtgaaagggtaatggatggacatccactaatagatatattcataaca 22748884  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 12753695 - 12753855
Alignment:
Q  15 tattctacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagt 114  Q
    |||| ||||||| |||| | || ||| |||||||| || |||||||||||| || ||| |  ||||| |||||| ||||| ||||||| |||| ||||||    
T  12753695 tattatacttcacaagtgtgtcattacattgtaatgtaggtcctatttataagacacatat-aggtacatgaatgatcacattacaatccacttactagt 12753793  T
Q  115 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
     ||    ||||||||| | |||||| | | || |||| ||||||||||||  ||||||||||||||    
T  12753794 gag----agttacaagcatgtggaagggttatagatgaacatccactaatatatatattcataaca 12753855  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 18845665 - 18845568
Alignment:
Q  79 gtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataa 178  Q
    |||||||||||||||| ||||||| |||| ||||||     ||||||||||| | |||||| ||||||| ||||||||||||||||| ||||||||||||    
T  18845665 gtaaatgaataatcacattacaatccacttactagtg----ggagttacaagcatgtggaaggttaatgaatggacatccactaattaatatattcataa 18845570  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 16243187 - 16243286
Alignment:
Q  77 aggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcat 176  Q
    ||||||| |||||||||| || |||| |||| ||||||     ||||||||| ||| || ||| ||||||| ||||||||||| ||||| ||||||||||    
T  16243187 aggtaaaagaataatcacatttcaatccacttactagtg----ggagttacatgtatgtagaaggttaatgaatggacatccattaatttatatattcat 16243282  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 16423674 - 16423575
Alignment:
Q  77 aggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcat 176  Q
    ||||||| |||||||||| || |||| |||| ||||||     |||||| || ||| || ||| ||||||||||||||||||| || || ||||||||||    
T  16423674 aggtaaaagaataatcacatttcaatccacttactagtg----ggagttgcatgtatgtagaaggttaatggatggacatccaatagtttatatattcat 16423579  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 18557638 - 18557704
Alignment:
Q  115 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacat 181  Q
    |||| ||||||| ||||| |||||| |||||  | || |||||||||| ||||||||||||||||||    
T  18557638 tagtgggagttataagtatgtggaaggttaaaagttgaacatccactacttgatatattcataacat 18557704  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 18845469 - 18845527
Alignment:
Q  121 gagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataac 179  Q
    |||||||||||   ||||| ||||||  ||| |||||||||||||||||||||||||||    
T  18845469 gagttacaagtctatggaaggttaataaatgaacatccactaattgatatattcataac 18845527  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 27317661 - 27317601
Alignment:
Q  120 ggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  27317661 ggagttacatgtatgtggaaggttaatggatggacatccactaattgttatattcataaca 27317601  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 145484 - 145549
Alignment:
Q  115 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    |||| ||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  145484 tagtgggagttacaagcatgtggaagggtaatggatggacatccactaatagatatattcataaca 145549  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 3850415 - 3850570
Alignment:
Q  20 tacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagta 119  Q
    ||||||| |||| | |||||| |||| ||||||  | |||||||||||| |||||  |||||||||||||||||| || |||| |||| ||||||         
T  3850415 tacttcataagtgtgtctttatattgcaatatagattctatttataggacacaaat-aggtaaatgaataatcacatttcaatccacttactagtg---- 3850509  T
Q  120 ggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    ||||||||| | | ||||||  ||||||||||| ||||| ||||||  |||||||||||||    
T  3850510 ggagttacatgcatgtggaagattaatggatggtcatccgctaatttttatattcataaca 3850570  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 15636386 - 15636451
Alignment:
Q  115 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    |||| ||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||||||||    
T  15636386 tagtgggagttacaagtatgtggaggggtaatggatggacatccactaattgatataatcataaca 15636451  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 11713364 - 11713277
Alignment:
Q  82 aatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatatt 173  Q
    ||||||||||||| ||| ||| ||||||    ||||| ||||||| |||||  ||||| |||||| ||||||||||||||||||||||||||    
T  11713364 aatgaataatcacattagaatccactca----ttagtgggagttataagtatctggaaggttaatagatggacatccactaattgatatatt 11713277  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 18080079 - 18080115
Alignment:
Q  148 gatggacatccactaattgatatattcataacattct 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  18080079 gatggacatccactaatatatatattcataacattct 18080115  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 8049036 - 8049132
Alignment:
Q  80 taaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataac 179  Q
    |||||||||||| || ||||||| ||||||||||| ||    ||||| ||||| |||||| ||||||| ||| ||||  || ||||||||||||||||||    
T  8049036 taaatgaataatgacattacaattcactcactagtgag----agttataagtatgtggaaggttaatgaatgaacatttacaaattgatatattcataac 8049131  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 34322413 - 34322347
Alignment:
Q  115 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacat 181  Q
    |||| ||||||||||| | |||||||| | || ||| |||||||||||||  |||||||||||||||    
T  34322413 tagtgggagttacaagcatgtggaaaggttatagatagacatccactaatatatatattcataacat 34322347  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 34326362 - 34326296
Alignment:
Q  114 ttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    ||||| ||||||||||| | |||||| | | || |||||||||||||||||  ||||||||||||||    
T  34326362 ttagtgggagttacaagcatgtggaagggttatagatggacatccactaatatatatattcataaca 34326296  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 19203713 - 19203797
Alignment:
Q  22 cttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcact 107  Q
    ||||| |||| | |||||| |||||||||||  |||| ||||| ||| |||||  |||||||||||||||||| ||||||| ||||    
T  19203713 cttcacaagtgtgtctttatattgtaatatagatcctgtttattggacacaaat-aggtaaatgaataatcacattacaatccact 19203797  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 22274791 - 22274726
Alignment:
Q  115 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 180  Q
    |||| ||||||||||| | |||||| | | || |||||||||||||||||  ||||||||||||||    
T  22274791 tagtgggagttacaagcatgtggaaggattatagatggacatccactaatatatatattcataaca 22274726  T

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