View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_54 (Length: 204)
Name: NF7025_low_54
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_54 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 333690 - 333516
Alignment:
| Q |
14 |
aacctgtgcaaggattcgaatttttgcaagtttttcaacaaagtcgatgccaacttccctttgtaaaacatctttgagaagatttccaagcaacttacag |
113 |
Q |
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| T |
333690 |
aacctgtgcaaggattcgaatttttgcaagtttttcaacaaagtcgatgccaacttccctttgtaaaacatctttgagaagatttccaagcaacttacag |
333591 |
T |
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| Q |
114 |
tcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcatgtttactcgaacacag |
188 |
Q |
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| T |
333590 |
tcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcatgtttactcgaacacag |
333516 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 42169015 - 42168930
Alignment:
| Q |
87 |
ttgagaagatttccaagcaacttacagtcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcat |
172 |
Q |
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| T |
42169015 |
ttgagaagattaccaagcaacctacaatcatcatcaaagctctggaacgagatttcttcagcaatatcatctgtagtgtctgtcat |
42168930 |
T |
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