View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7025_low_6 (Length: 672)
Name: NF7025_low_6
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Complemental strand, 31545809 - 31545252
Alignment:
| Q |
17 |
acatcaagttatatttatttcaatttgtctttaatatcaagagtaacgtg--ttcatgcaattggaactgcaatttaaaactttgactttggattggaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31545809 |
acatcaagttatatttatttcaatttttctttaatatcaagagtaacgtgagttcatgcaattggaactgcaatttaaaactttgactttggattggaca |
31545710 |
T |
|
| Q |
115 |
ccaaacaaatactgctagaggcctagagtaagacatagcaatatcatgttaccctaaaatttaaaatgacgtgcaaattactcgatttcacttcttagat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31545709 |
ccaaacaaatactgctagaggcctagagcaagacataggaatatcatgttaccctaaaatttaaaatgacgtgcaaattactcgatttcactt-ttagat |
31545611 |
T |
|
| Q |
215 |
tcattgaataattagatggagcaaatacacccgtttcaactttcaaagggcggggataagattgattaatggtatgtataatgatatgatatgcagaccc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31545610 |
tcattgaataattagatggagcaaatacacccatttcaactttcaaagggcggggataagattgattaatggtatgtataatgatatgatatgcagaccc |
31545511 |
T |
|
| Q |
315 |
aaaacacaacacaaggatggcctacacagtgcaaaatgtgctacttggcagtcaatgtcatgatgatattataagaaatcaagagattttgaatatgaaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31545510 |
aaaacacaacacaaggatggcctacacagtgcaaaatgtgctacttggcagtcaatgtgatgatgatattataagaaatcaagagattttgaatatgaaa |
31545411 |
T |
|
| Q |
415 |
atgacattatatgatatgatctttatccaaaactgtcagttcctcataggaataagaaaccttatggttcaagattttgtaggcagtttttagcgtataa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31545410 |
atgacattatatgatatgatctttatccaaaactgttagttcctcataggaataagaaaccttatggttcaagattttgtaggcagtttttagcgtataa |
31545311 |
T |
|
| Q |
515 |
aaagtaaaatactagaatagattctttgcttatcacttgttcctatcatatcatatgtt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31545310 |
aaagtaaaatactagaatagattctttgcttatcacttgttcctatcatatcatatgtt |
31545252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University