View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7025_low_7 (Length: 651)
Name: NF7025_low_7
Description: NF7025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7025_low_7 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 138 - 426
Target Start/End: Complemental strand, 44285890 - 44285603
Alignment:
| Q |
138 |
agaagctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctga |
237 |
Q |
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| T |
44285890 |
agaagctttagtactcaatccatctctgttgctgcttcccggtaacattgatcaatcaatttacgg-cggaatcttcctttaagtcaatcgagtgcctga |
44285792 |
T |
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| Q |
238 |
cttctctattgatctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatg |
337 |
Q |
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| T |
44285791 |
cttctctattgatctgaccgaattgattgagacagagagtaaaggtgcgaatcggctaaaaggtcgagtccgagattgggagaagaactagcaagaaatg |
44285692 |
T |
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| Q |
338 |
cagacttcgctccgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaacttccggtaagaa |
426 |
Q |
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| T |
44285691 |
ccgaatttgctccgcatcgttaggtaaagatccccattggccaatcttcctttaatggatatattcttcaatgtaacttccggtaagaa |
44285603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 141 - 426
Target Start/End: Original strand, 44070126 - 44070410
Alignment:
| Q |
141 |
agctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctgactt |
240 |
Q |
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| T |
44070126 |
agctttagtactcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaacgg-cggaaccttcctttaagtcaatcaagtgcctgactt |
44070224 |
T |
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| Q |
241 |
ctctattgatctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcag |
340 |
Q |
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| T |
44070225 |
ctctattgatctgaccggctagattgagacagagagtaaaggtgcaaaccggctaaacggctgagtccgagattgggagaagaactagcaagaaatgccg |
44070324 |
T |
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| Q |
341 |
acttcgctccgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaacttccggtaagaa |
426 |
Q |
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| T |
44070325 |
aattcgctccgcattgtaaggtaaagatctccattgtccaatcttgctttaatggatatattcttcaatgtaacttctggtaagaa |
44070410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 472 - 637
Target Start/End: Original strand, 49237921 - 49238086
Alignment:
| Q |
472 |
cagactgcctctttctagatagattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgc |
571 |
Q |
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| T |
49237921 |
cagactgcctatttctagatagattctatggatgatgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccaatgcatgtcgtac |
49238020 |
T |
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| Q |
572 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
637 |
Q |
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| T |
49238021 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
49238086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 492 - 637
Target Start/End: Complemental strand, 6329 - 6184
Alignment:
| Q |
492 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
591 |
Q |
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| T |
6329 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
6230 |
T |
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| Q |
592 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
637 |
Q |
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| T |
6229 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
6184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 16443749 - 16443843
Alignment:
| Q |
141 |
agctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctg |
236 |
Q |
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| T |
16443749 |
agctttagtactcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaac-ggcggaaccttcctttaagtcaatcaagtgcctg |
16443843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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