View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7026_high_4 (Length: 606)

Name: NF7026_high_4
Description: NF7026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7026_high_4
NF7026_high_4
[»] chr1 (10 HSPs)
chr1 (1-553)||(50391894-50392438)
chr1 (391-505)||(11199914-11200030)
chr1 (441-505)||(43834538-43834602)
chr1 (429-504)||(52551269-52551344)
chr1 (469-511)||(39030152-39030194)
chr1 (464-512)||(6356867-6356916)
chr1 (446-510)||(4392238-4392302)
chr1 (433-505)||(11766028-11766100)
chr1 (68-104)||(33735278-33735314)
chr1 (428-504)||(38637540-38637616)
[»] chr5 (6 HSPs)
chr5 (433-503)||(27856164-27856234)
chr5 (428-511)||(28296072-28296155)
chr5 (441-488)||(18415618-18415665)
chr5 (427-503)||(15159178-15159254)
chr5 (433-503)||(21488819-21488889)
chr5 (439-503)||(33244869-33244933)
[»] chr8 (5 HSPs)
chr8 (464-513)||(19263309-19263358)
chr8 (470-513)||(38291857-38291900)
chr8 (440-505)||(5073024-5073089)
chr8 (431-480)||(2372874-2372923)
chr8 (428-493)||(1418035-1418100)
[»] chr7 (6 HSPs)
chr7 (438-523)||(38116719-38116804)
chr7 (445-513)||(27938807-27938875)
chr7 (438-501)||(25078144-25078207)
chr7 (440-511)||(45100226-45100297)
chr7 (428-505)||(33730103-33730180)
chr7 (464-505)||(6677091-6677132)
[»] chr3 (10 HSPs)
chr3 (464-513)||(50435-50484)
chr3 (444-505)||(42059846-42059907)
chr3 (446-505)||(43978626-43978685)
chr3 (450-503)||(43407680-43407733)
chr3 (439-503)||(37626642-37626706)
chr3 (464-511)||(15863149-15863196)
chr3 (433-475)||(28979035-28979077)
chr3 (449-510)||(23161955-23162016)
chr3 (442-502)||(46954880-46954940)
chr3 (442-510)||(51677343-51677411)
[»] chr2 (7 HSPs)
chr2 (441-510)||(19548187-19548256)
chr2 (441-524)||(8252621-8252704)
chr2 (441-505)||(10066574-10066638)
chr2 (441-513)||(34217580-34217652)
chr2 (439-490)||(40732555-40732606)
chr2 (470-513)||(6467003-6467046)
chr2 (464-513)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (464-513)||(193-242)
[»] chr6 (3 HSPs)
chr6 (442-511)||(14221276-14221345)
chr6 (440-497)||(28940816-28940873)
chr6 (439-488)||(33424561-33424610)
[»] chr4 (7 HSPs)
chr4 (464-513)||(22681170-22681219)
chr4 (11-106)||(52560616-52560709)
chr4 (441-511)||(11307624-11307694)
chr4 (441-511)||(26986701-26986771)
chr4 (442-502)||(21748248-21748308)
chr4 (470-513)||(42756772-42756815)
chr4 (449-511)||(20090557-20090619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (440-511)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (440-511)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 50392438 - 50391894
Alignment:
Q  1 aaaggggcttaccaccatattttttgggtgcatgaaaaatttcaacaagagaataaaaacatgaacttttggcaagaaacctgtgaaacaaagaaatagc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392438 aaaggagcttaccaccatattttttgggtgcatgaaaaatttcaacaagagaataaaaacatgaacttttggcaagaaacctgtgaaacaaagaaatagc 50392339  T
Q  101 aaagcacatagcaatatcactcataacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagag 200  Q
    ||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392338 aa------------tatcactcataacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagag 50392251  T
Q  201 agcaatatccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaacaatagaataaatggtagc----aaacaacaaagataga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||||||||||||||||    
T  50392250 agcaatatccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaagaatagaataaatggtagctagcaaacaacaaagataga 50392151  T
Q  297 atgaagaggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttgg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392150 atgaagaggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttgg 50392051  T
Q  397 attttaagtatgagtgtttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttgga 496  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392050 attttaagtatgagtggttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttgga 50391951  T
Q  497 tggagatgtcgtgtcaacctctattatgcttcgggaatattaacttatttttgcttt 553  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  50391950 tggagatgtcgtgtcaacctctattatgctccgggaatattgacttatttttgcttt 50391894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 505
Target Start/End: Original strand, 11199914 - 11200030
Alignment:
Q  391 tgttggattttaagtatgagtgttta-gtcgcacattgc-tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 488  Q
    |||||| |||||||| |||||| ||| ||| |||||||| ||| |||  |||||||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  11199914 tgttgggttttaagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgccttaag 11200013  T
Q  489 gttttggatggagatgt 505  Q
    ||||||| |||||||||    
T  11200014 gttttgggtggagatgt 11200030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 43834538 - 43834602
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    |||||||| |||||||||| | | ||| ||||||||||||||||||||||||| |||||||||||    
T  43834538 aaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgt 43834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 52551269 - 52551344
Alignment:
Q  429 tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 504  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||||| |||||| ||| || |||| |||| |||||    
T  52551269 tataaatgtgtaaaatgttagatatatgagagatgtgacacatatatctaatgccttgagattttagatgaagatg 52551344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 511
Target Start/End: Original strand, 39030152 - 39030194
Alignment:
Q  469 catatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    ||||||||||||||||||||||||| | ||||||||| |||||    
T  39030152 catatacctaatgtcttaaggttttaggtggagatgtggtgtc 39030194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 6356916 - 6356867
Alignment:
Q  464 tgactcatatacctaatgtctt-aaggttttggatggagatgtcgtgtca 512  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||||    
T  6356916 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 6356867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 510
Target Start/End: Complemental strand, 4392302 - 4392238
Alignment:
Q  446 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 510  Q
    |||||||||||| | | | ||| ||||||||| ||| |||||| |||||||||||||||| ||||    
T  4392302 ttggatatataacagaggagacccatatacctgatgccttaagattttggatggagatgtggtgt 4392238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 11766100 - 11766028
Alignment:
Q  433 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    |||| |||||||||||||| ||||||| |  ||||  ||  |||||||| ||||||||||||| |||||||||    
T  11766100 aatgggtaaaatgttggatttataagagagttgacctattaacctaatgccttaaggttttgggtggagatgt 11766028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 33735278 - 33735314
Alignment:
Q  68 tttggcaagaaacctgtgaaacaaagaaatagcaaag 104  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  33735278 tttggcaagaaacttgtgtaacaaagaaatagcaaag 33735314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 38637540 - 38637616
Alignment:
Q  428 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 504  Q
    |||||||||  |||||||||||  |||||||  | |||||  |||||||||||| |||||||| |||| ||||||||    
T  38637540 ctataaatggataaaatgttggccatataagtgaggtgacctatatacctaatgccttaaggtattgggtggagatg 38637616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 27856164 - 27856234
Alignment:
Q  433 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 503  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||| |||||||    
T  27856164 aatgggtaaaatgttggatatataagagaggtggctcatatacctaatgccttaaagttttgggtggagat 27856234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 511
Target Start/End: Complemental strand, 28296155 - 28296072
Alignment:
Q  428 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    |||| |||| ||||||| ||| || ||||||| | ||||| |||||||||||| |||||||||||||| ||||||||| |||||    
T  28296155 ctatgaatgagtaaaatattgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtc 28296072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 18415665 - 18415618
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaag 488  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  18415665 aaatgttggatatataagataggagactcataaacctaatgtcttaag 18415618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 503
Target Start/End: Complemental strand, 15159254 - 15159178
Alignment:
Q  427 gctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 503  Q
    ||||||||||  |||||||||  || ||||||| |||||||||||||| ||||||| || | ||||||| |||||||    
T  15159254 gctataaatggataaaatgttacatgtataagagatgtgactcatatatctaatgttttgaagttttgggtggagat 15159178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 21488889 - 21488819
Alignment:
Q  433 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 503  Q
    |||| |||||||||||||||||||||| ||||||| | || || | |||||||||| |||| | |||||||    
T  21488889 aatgagtaaaatgttggatatataagagatgtgacccttaaacttgatgtcttaagatttttggtggagat 21488819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 503
Target Start/End: Original strand, 33244869 - 33244933
Alignment:
Q  439 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 503  Q
    |||||||||||||||||||||||||||| || ||||  ||||   |||| ||||||||| |||||    
T  33244869 taaaatgttggatatataagatatgtgaatcgtatatttaatacattaaagttttggatagagat 33244933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 464 - 513
Target Start/End: Complemental strand, 19263358 - 19263309
Alignment:
Q  464 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  19263358 tgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaa 19263309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 513
Target Start/End: Original strand, 38291857 - 38291900
Alignment:
Q  470 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaa 38291900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 5073024 - 5073089
Alignment:
Q  440 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    |||||||||||||||||||| | | | ||||||||| ||||| ||||||||||||| |||||||||    
T  5073024 aaaatgttggatatataagagaggcgtctcatatacgtaatgccttaaggttttgggtggagatgt 5073089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 2372874 - 2372923
Alignment:
Q  431 taaatgtgtaaaatgttggatatataagatatgtgactcatatacctaat 480  Q
    |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  2372874 taaatgggtatattgttggatatataagatatgtgactcatatacataat 2372923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 493
Target Start/End: Complemental strand, 1418100 - 1418035
Alignment:
Q  428 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggtttt 493  Q
    |||| |||| ||||||| ||||||||||||||||| ||| ||||||| | ||||| |||| |||||    
T  1418100 ctatgaatgagtaaaatattggatatataagatatttgattcatatatcaaatgttttaaagtttt 1418035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 523
Target Start/End: Complemental strand, 38116804 - 38116719
Alignment:
Q  438 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattat 523  Q
    ||||||| |||| ||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||| || ||| ||||| ||||    
T  38116804 gtaaaatattggctatataagatatgtgacacgtatacataacgtcttaaggttttggatgaagatgtggtttcatcctctcttat 38116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 27938807 - 27938875
Alignment:
Q  445 gttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||||||||||||| | | ||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  27938807 gttggatatataagaaaggagactcatatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 501
Target Start/End: Original strand, 25078144 - 25078207
Alignment:
Q  438 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggag 501  Q
    |||||||| | ||||||||||| |||||| |||||||| ||||||||||||||||||| |||||    
T  25078144 gtaaaatgatcgatatataagagatgtgattcatatacataatgtcttaaggttttgggtggag 25078207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 45100226 - 45100297
Alignment:
Q  440 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    ||||||||| |||||||||| |  ||||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  45100226 aaaatgttgaatatataagagagatgactcatataactaatgtcttaaagttttagatggagatgtggtgtc 45100297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 505
Target Start/End: Complemental strand, 33730180 - 33730103
Alignment:
Q  428 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    |||| |||| || |||||||||||||| |||| | ||||| |||| | ||||||  ||||||||||||||||||||||    
T  33730180 ctatgaatgggttaaatgttggatataaaagagaggtgacccatagagctaatgcattaaggttttggatggagatgt 33730103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 6677132 - 6677091
Alignment:
Q  464 tgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    ||||||||||||| |||||||||||||||| |||| ||||||    
T  6677132 tgactcatataccaaatgtcttaaggttttagatgaagatgt 6677091  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 464 - 513
Target Start/End: Original strand, 50435 - 50484
Alignment:
Q  464 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  50435 tgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaa 50484  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 505
Target Start/End: Complemental strand, 42059907 - 42059846
Alignment:
Q  444 tgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    |||| ||||||||||| | | ||| | |||||||||||||||||||||||||||||||||||    
T  42059907 tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatgt 42059846  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 505
Target Start/End: Complemental strand, 43978685 - 43978626
Alignment:
Q  446 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    |||||||||||||| | | |||||||||||||| || ||||||||||||| |||||||||    
T  43978685 ttggatatataagagaggagactcatatacctattgccttaaggttttgggtggagatgt 43978626  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 503
Target Start/End: Original strand, 43407680 - 43407733
Alignment:
Q  450 atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 503  Q
    |||||||||| | ||||||||||||||||||| | ||||||||||| |||||||    
T  43407680 atatataagaaaggtgactcatatacctaatgacgtaaggttttgggtggagat 43407733  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 503
Target Start/End: Original strand, 37626642 - 37626706
Alignment:
Q  439 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 503  Q
    ||||||||||||||||||||| | || |  |||||||||||||||||||| |||| | |||||||    
T  37626642 taaaatgttggatatataagagaggtcatacatatacctaatgtcttaagattttaggtggagat 37626706  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 511
Target Start/End: Original strand, 15863149 - 15863196
Alignment:
Q  464 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    |||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  15863149 tgactcgtatacttaatgtcttaaggttttgaatggagacgtcgtgtc 15863196  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 475
Target Start/End: Original strand, 28979035 - 28979077
Alignment:
Q  433 aatgtgtaaaatgttggatatataagatatgtgactcatatac 475  Q
    |||||||||||| |||||||||||||| | |||||||||||||    
T  28979035 aatgtgtaaaatattggatatataagagaggtgactcatatac 28979077  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 510
Target Start/End: Original strand, 23161955 - 23162016
Alignment:
Q  449 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 510  Q
    ||||||||||| | ||||||||||||||  ||| |||||| |||||| ||||||||| ||||    
T  23161955 gatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgt 23162016  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 502
Target Start/End: Complemental strand, 46954940 - 46954880
Alignment:
Q  442 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 502  Q
    |||||| |||||||||||||||| |||||||||| ||| || |||| ||||| || |||||    
T  46954940 aatgtttgatatataagatatgtaactcatatacttaacgttttaaagttttagaaggaga 46954880  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 510
Target Start/End: Original strand, 51677343 - 51677411
Alignment:
Q  442 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 510  Q
    ||||||||||||| || | |  ||||||||||||||||||||||   ||||||| ||||||||| ||||    
T  51677343 aatgttggatatagaaaagagatgactcatatacctaatgtcttggagttttgggtggagatgtggtgt 51677411  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 510
Target Start/End: Original strand, 19548187 - 19548256
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 510  Q
    ||||||||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||| ||||    
T  19548187 aaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgt 19548256  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 524
Target Start/End: Complemental strand, 8252704 - 8252621
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattatg 524  Q
    ||||||||||||||||||| | || |||| ||||||||| | ||||| ||||||||||||||||| |||||  ||||| |||||    
T  8252704 aaatgttggatatataagagaggtaactcgtatacctaacgccttaaagttttggatggagatgtggtgtcgccctctcttatg 8252621  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 10066574 - 10066638
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 505  Q
    ||||||||||||||||||||| | ||  ||||||||||||| |||||| |||||| |||||||||    
T  10066574 aaatgttggatatataagataggagatccatatacctaatgccttaagattttgggtggagatgt 10066638  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 513
Target Start/End: Original strand, 34217580 - 34217652
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||| ||||||||||||||| |||||| ||||||||||   ||||||||||||||  ||||||| |||||||    
T  34217580 aaatggtggatatataagataggtgacttatatacctaactccttaaggttttggaatgagatgtggtgtcaa 34217652  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 490
Target Start/End: Complemental strand, 40732606 - 40732555
Alignment:
Q  439 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggt 490  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  40732606 taaaatgtttgatatataagataagtggcttatatacctaatgtcttaaggt 40732555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 513
Target Start/End: Original strand, 6467003 - 6467046
Alignment:
Q  470 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  6467003 atataactaatgtcttaagtttttggatggagatgtggtgtcaa 6467046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 513
Target Start/End: Original strand, 20444184 - 20444233
Alignment:
Q  464 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    |||||||||||||||||| |||||||||| ||||| |||| | |||||||    
T  20444184 tgactcatatacctaatgccttaaggtttaggatgaagatatggtgtcaa 20444233  T

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Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 513
Target Start/End: Complemental strand, 242 - 193
Alignment:
Q  464 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  242 tgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaa 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 511
Target Start/End: Original strand, 14221276 - 14221345
Alignment:
Q  442 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    |||||||||| ||||||| | |||||||||  | ||||||| |||||||||||||||||||||| |||||    
T  14221276 aatgttggatttataagagaggtgactcattaatctaatgtattaaggttttggatggagatgtggtgtc 14221345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 28940873 - 28940816
Alignment:
Q  440 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggat 497  Q
    ||||||||||| |||||||| | | ||||| |||||||||||||||||| ||||||||    
T  28940873 aaaatgttggacatataagagaagagactcgtatacctaatgtcttaagattttggat 28940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 33424610 - 33424561
Alignment:
Q  439 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 488  Q
    ||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  33424610 taaaatgatagatatataagagatgtgactcatataccaaatgtcttaag 33424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 513
Target Start/End: Complemental strand, 22681219 - 22681170
Alignment:
Q  464 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  22681219 tgactcatatacctaatgtcttaaggtttagggtggagatgtggtgtcaa 22681170  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 52560616 - 52560709
Alignment:
Q  11 accaccatattttttgggtgcatgaaaaatttcaacaagagaataaaaacatgaacttttggcaagaaacctgtgaaacaaagaaatagcaaagca 106  Q
    |||||||||||||| ||||||||| |||| || || ||||||||  ||| |||||  ||||| ||||||| |||| | ||||||||||||||||||    
T  52560616 accaccatatttttggggtgcatggaaaactttaaaaagagaatggaaaaatgaa--tttggtaagaaacatgtgtagcaaagaaatagcaaagca 52560709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 511
Target Start/End: Complemental strand, 11307694 - 11307624
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    ||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  11307694 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 11307624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 511
Target Start/End: Complemental strand, 26986771 - 26986701
Alignment:
Q  441 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    |||||||| |||||| ||| |  |||| ||||||| ||||| ||||||||||||||||||||||| |||||    
T  26986771 aaatgttgtatatattagaaaaatgacccatatacataatgccttaaggttttggatggagatgtggtgtc 26986701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 502
Target Start/End: Original strand, 21748248 - 21748308
Alignment:
Q  442 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 502  Q
    ||||||| |||||||| | | ||||||||||| |||||||||||||  |||||||||||||    
T  21748248 aatgttgaatatataaaagacgtgactcatatgcctaatgtcttaaaattttggatggaga 21748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 42756815 - 42756772
Alignment:
Q  470 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 513  Q
    |||||||||| |||||||||||||||||| |||||| |||||||    
T  42756815 atatacctaaagtcttaaggttttggatgaagatgtggtgtcaa 42756772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 20090619 - 20090557
Alignment:
Q  449 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    ||||||||||| | |||||| ||||||||||||  ||| |||||||||||| || ||||||||    
T  20090619 gatatataagagaggtgacttatatacctaatgcattagggttttggatggcgacgtcgtgtc 20090557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 4184 - 4113
Alignment:
Q  440 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    |||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  4184 aaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 29063 - 29136
Alignment:
Q  440 aaaatgttgg--atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 511  Q
    ||||||||||  |||||||||| | | |||||||||| || |||||||||| |||||| ||||||||| |||||    
T  29063 aaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtc 29136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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