View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7026_high_5 (Length: 363)
Name: NF7026_high_5
Description: NF7026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7026_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 51454383 - 51454545
Alignment:
| Q |
1 |
tggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttc |
100 |
Q |
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| T |
51454383 |
tggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttc |
51454482 |
T |
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| Q |
101 |
ggttgaaggtggtgacattgcagctagggattcattctccgctaaagatgcggcggcgataat |
163 |
Q |
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| T |
51454483 |
ggttgaaggtgatgacattgcagctagggattcattctccgctaaagctgcggcggcgataat |
51454545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 51454623 - 51454732
Alignment:
| Q |
241 |
cgttgttagggaacagaacaaaggaagaagctggtgaaggtgataatgatgccgggggctcttcatcatttcaactggtgagaaagagacgcggcagaaa |
340 |
Q |
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| T |
51454623 |
cgttgttagggaacagaacaaaggaagaagctggtgaaggtgataatgatgccggcggctcttcatcatttcaaccggtgagaaagagacgcggcagaaa |
51454722 |
T |
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| Q |
341 |
gataaaggtg |
350 |
Q |
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| T |
51454723 |
gagaaaggtg |
51454732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 51478565 - 51478697
Alignment:
| Q |
1 |
tggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttc |
100 |
Q |
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| T |
51478565 |
tggtggaagtagctgaagaatctgttcctgatcgaggaaaacaagacatggatgttggacccaaaacggtggtgttgttgtcgacggacgatgatggttc |
51478664 |
T |
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| Q |
101 |
ggttgaaggtggtgacattgcagctagggattc |
133 |
Q |
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| T |
51478665 |
tgttgaagctgatagcatggcagctaaggattc |
51478697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 51474372 - 51474482
Alignment:
| Q |
8 |
agcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttcggttgaa |
107 |
Q |
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| T |
51474372 |
agcagctgaagaatatgttcctgatcgagaaaaacaaactatggatgttggcgccaaagcagtggtgttgttgtcatcggacgatgaaggttccgttgaa |
51474471 |
T |
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| Q |
108 |
ggtggtgacat |
118 |
Q |
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| T |
51474472 |
gctgatgacat |
51474482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 43159816 - 43159896
Alignment:
| Q |
15 |
gaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaa |
95 |
Q |
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| T |
43159816 |
gaagaatctgttcctgatcaagaaaaacaagctatgaatgttggcgccaatacggtggagttgctgttgacggacgatgaa |
43159896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 43159692 - 43159745
Alignment:
| Q |
8 |
agcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgc |
61 |
Q |
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|||||| ||||| ||| ||||||||| ||| |||||||| |||||||||||||| |
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| T |
43159692 |
agcagcagaagagtctgttcctgatcaagataaacaagctatgaatgttggcgc |
43159745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 43160047 - 43160092
Alignment:
| Q |
297 |
ggctcttcatcatttcaactggtgagaaagagacgcggcagaaaga |
342 |
Q |
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| T |
43160047 |
ggctcttcatcatttcaaccggagagaaagaaatgcggcagaaaga |
43160092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 18078966 - 18079091
Alignment:
| Q |
8 |
agcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttcggttgaa |
107 |
Q |
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| T |
18078966 |
agcagttgaagaatttgctcctgatcgagaaaaacaagctatggactttggcgccaaaatggtgttgctgttgtcgacggacgatgaaggttctgttgaa |
18079065 |
T |
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| Q |
108 |
ggtggtgacattgcagctagggattc |
133 |
Q |
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| T |
18079066 |
gctgatgacatggcagctaaggattc |
18079091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 18077061 - 18077186
Alignment:
| Q |
8 |
agcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttcggttgaa |
107 |
Q |
| |
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|||||||| |||||| |||||| ||||||||||||| | ||| ||||||||||||| || |||||| | ||| | |||||||||||||| |||||| |
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| T |
18077061 |
agcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttggcgccaatacagtggtggtgttgtcgtcagacgatgaaggttccgttgaa |
18077160 |
T |
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| Q |
108 |
ggtggtgacattgcagctagggattc |
133 |
Q |
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| || |||||| | ||||| |||||| |
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| T |
18077161 |
gctgatgacatggaagctaaggattc |
18077186 |
T |
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