View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7026_low_8 (Length: 340)
Name: NF7026_low_8
Description: NF7026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7026_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 41079878 - 41080194
Alignment:
| Q |
19 |
acttctccatgaatgggttggccaaagagtgtggtggatagtaatcaatgcaatcgtcccacacatt---tctatcatcaccaacaacaacatctctcat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41079878 |
acttctccatgaatgggttggccaaagagtgtggtggatagtaatcaatgcaatcgtcccacacattatttctatcatcaccaacaacaacatctctcat |
41079977 |
T |
|
| Q |
116 |
tacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagcttccatatacccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41079978 |
tacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagcttccatatacccc |
41080077 |
T |
|
| Q |
216 |
aacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatctaaactcatcccaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080078 |
aacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatctaaactcatcccaa |
41080177 |
T |
|
| Q |
316 |
ttccatctatctctgct |
332 |
Q |
| |
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||||||||||| ||||| |
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| T |
41080178 |
ttccatctatcactgct |
41080194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 103 - 332
Target Start/End: Original strand, 23072868 - 23073097
Alignment:
| Q |
103 |
caacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagc |
202 |
Q |
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|||||||| |||| |||||||| | ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||| || | |||||| || || |
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| T |
23072868 |
caacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaatactctatcacctttcttgagcctcttttttgc |
23072967 |
T |
|
| Q |
203 |
ttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatct |
302 |
Q |
| |
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|||||| ||||| |||||||||||||| ||||| || || |||||||| || | ||||| || ||| ||||| || || || ||||| ||| | | |||| |
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| T |
23072968 |
ttccatgtaccctaacacataccacaagctactagcagaagtgttaccgaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttaaatct |
23073067 |
T |
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| Q |
303 |
aaactcatcccaattccatctatctctgct |
332 |
Q |
| |
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|||||||| ||||||||||| ||| ||||| |
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| T |
23073068 |
aaactcattccaattccatcaatcactgct |
23073097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 103 - 332
Target Start/End: Original strand, 23077473 - 23077702
Alignment:
| Q |
103 |
caacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagc |
202 |
Q |
| |
|
|||||||| |||| |||||||| | ||||| ||||||||||| |||||||| || |||||||| || ||||| ||||||||||| | |||||| || || |
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|
| T |
23077473 |
caacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaaaactctatcacctttttttagcctctttttggc |
23077572 |
T |
|
| Q |
203 |
ttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatct |
302 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| || || ||||||||||| | ||||| || ||| ||||| || || || ||||| ||| | |||||| |
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| T |
23077573 |
ttccatgtaccctaacacataccacaaactaccagcagaagtgttaccaaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttagatct |
23077672 |
T |
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| Q |
303 |
aaactcatcccaattccatctatctctgct |
332 |
Q |
| |
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|||||| | |||| |||||| ||| ||||| |
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|
| T |
23077673 |
aaactctttccaactccatcaatcactgct |
23077702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 103 - 332
Target Start/End: Complemental strand, 23111469 - 23111240
Alignment:
| Q |
103 |
caacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagc |
202 |
Q |
| |
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|||||||| |||| |||||||| | ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||| || | |||||| || || |
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| T |
23111469 |
caacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaatactctatcacctttcttgagcctcttttttgc |
23111370 |
T |
|
| Q |
203 |
ttccatataccccaacacataccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatct |
302 |
Q |
| |
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|||||| ||||| |||||||||||||| ||||| || || |||||||| || | ||||| || ||| ||||| || || || ||||| ||| | | |||| |
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| T |
23111369 |
ttccatgtaccctaacacataccacaagctactagcagaagtgttaccgaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttaaatct |
23111270 |
T |
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| Q |
303 |
aaactcatcccaattccatctatctctgct |
332 |
Q |
| |
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|||||||| ||||||||||| ||| ||||| |
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|
| T |
23111269 |
aaactcattccaattccatcaatcactgct |
23111240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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