View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7027_high_5 (Length: 247)
Name: NF7027_high_5
Description: NF7027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7027_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 49542063 - 49541929
Alignment:
| Q |
99 |
ttaggacttagtaatcaaatgtttctttcacttttcaattaataatgacgccataggagatcttcgtgcagagttgacaaactctgatatgcctttggtg |
198 |
Q |
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| T |
49542063 |
ttaggacttagtaatcaaatgtttctttcacttttcaaataataatgacgccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggtg |
49541964 |
T |
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| Q |
199 |
aaataaaaagttttccaactttctaatatctatat |
233 |
Q |
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| T |
49541963 |
aaataaaaagttttccaactttctaatatctatat |
49541929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 49542186 - 49542120
Alignment:
| Q |
14 |
atataccggttcgtcccttccttttccactctattattctgttcttgtcaaaattcatcatgtctag |
80 |
Q |
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| T |
49542186 |
atataccggttcgttccttccttttccactctattattctgttcttgtcaaaattcatcatgtctag |
49542120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 40917482 - 40917434
Alignment:
| Q |
149 |
ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt |
197 |
Q |
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| T |
40917482 |
ccataggagatcttcgtgcagagttgacaaagtgtgatgtgcctttggt |
40917434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 40917419 - 40917384
Alignment:
| Q |
198 |
gaaataaaaagttttccaactttctaatatctatat |
233 |
Q |
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| T |
40917419 |
gaaataaaaagttttccgactttctaatatctatat |
40917384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 2883859 - 2883907
Alignment:
| Q |
149 |
ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt |
197 |
Q |
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| T |
2883859 |
ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggt |
2883907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 3150707 - 3150659
Alignment:
| Q |
149 |
ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt |
197 |
Q |
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| T |
3150707 |
ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggt |
3150659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 2883922 - 2883955
Alignment:
| Q |
198 |
gaaataaaaagttttccaactttctaatatctat |
231 |
Q |
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| T |
2883922 |
gaaataaaaagttttccaacttcctaatatctat |
2883955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 3150644 - 3150611
Alignment:
| Q |
198 |
gaaataaaaagttttccaactttctaatatctat |
231 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |
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| T |
3150644 |
gaaataaaaagttttccaacttcctaatatctat |
3150611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 29251360 - 29251407
Alignment:
| Q |
149 |
ccataggagatcttcgtgcagagttgacaaactctgatatgcctttgg |
196 |
Q |
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|||| |||||||||||||||||||||||||| | |||| ||||||||| |
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| T |
29251360 |
ccatcggagatcttcgtgcagagttgacaaagtgtgatctgcctttgg |
29251407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 1086769 - 1086812
Alignment:
| Q |
154 |
ggagatcttcgtgcagagttgacaaactctgatatgcctttggt |
197 |
Q |
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| T |
1086769 |
ggagatcttcgtgcagagttgacaaagtgtgatctgcctttggt |
1086812 |
T |
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