View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7027_high_7 (Length: 232)
Name: NF7027_high_7
Description: NF7027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7027_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40389394 - 40389176
Alignment:
| Q |
1 |
agcaagagttgctccgagcagagacgctctttataggctatttgtttgtttacggtgtagtgtgctgaagcatgccactgcattgagaatggttagtaac |
100 |
Q |
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| T |
40389394 |
agcaagaattgctcctatcagagacgctctttataggctatttgtttgtttaaggtgtagtgtgctgaagcatgccactgcattgagaatggttagtaac |
40389295 |
T |
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| Q |
101 |
taccgcatttaactctgacctgaccggttgtcaatggttgttaggggtattttaagaagtttgagatgcttcagagcaaaacatgggtgtctaaagagaa |
200 |
Q |
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| T |
40389294 |
taccacatttagctctgaac-----ggttgtcaatggttgttaggggtattttaagaagtttgagatgcttcagagcaaaacatgggtgtctaaagagaa |
40389200 |
T |
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| Q |
201 |
attttctaacatctcacaggttct |
224 |
Q |
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| T |
40389199 |
attttctaacatctcataggttct |
40389176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 25714878 - 25714828
Alignment:
| Q |
19 |
cagagacgctctttataggctatttgtttgtttacggtgtagtgtgctgaa |
69 |
Q |
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| T |
25714878 |
cagagacactctttataggatatttgtttgtttgaggtgtagtgtcctgaa |
25714828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 43529119 - 43529036
Alignment:
| Q |
34 |
taggctatttgtttgtttacggtgtagtgtgctgaagcatgc------cactgcattgagaatggttagtaactaccgcattta |
111 |
Q |
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| T |
43529119 |
taggctatttgtttgtttaaggtgtagtgtgctgaagcaagccatgtgcactgcattgagaatggttagtaactaccacattta |
43529036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 43529036 - 43529002
Alignment:
| Q |
173 |
agagcaaaacatgggtgtctaaagagaaattttct |
207 |
Q |
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| T |
43529036 |
agagcaaaacatgggtgtctaaagagaaattttct |
43529002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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