View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7027_low_1 (Length: 334)

Name: NF7027_low_1
Description: NF7027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7027_low_1
NF7027_low_1
[»] chr3 (6 HSPs)
chr3 (1-315)||(23627638-23627952)
chr3 (158-315)||(23640405-23640562)
chr3 (190-312)||(23654354-23654476)
chr3 (73-108)||(3173548-3173583)
chr3 (73-107)||(31184515-31184549)
chr3 (73-102)||(38472203-38472232)
[»] chr4 (4 HSPs)
chr4 (72-108)||(14075155-14075191)
chr4 (73-102)||(22787243-22787272)
chr4 (73-102)||(38704677-38704706)
chr4 (80-108)||(56360430-56360458)
[»] chr7 (4 HSPs)
chr7 (73-108)||(13471528-13471563)
chr7 (72-105)||(1975243-1975276)
chr7 (73-106)||(3671376-3671409)
chr7 (73-105)||(12422596-12422628)
[»] chr5 (4 HSPs)
chr5 (71-106)||(2269845-2269880)
chr5 (72-108)||(18257360-18257396)
chr5 (72-108)||(35240496-35240532)
chr5 (72-108)||(38308539-38308575)
[»] chr2 (3 HSPs)
chr2 (73-108)||(42873978-42874013)
chr2 (72-102)||(18742565-18742595)
chr2 (73-102)||(39541443-39541472)
[»] chr6 (2 HSPs)
chr6 (73-107)||(32245390-32245424)
chr6 (72-108)||(32400913-32400949)
[»] chr1 (3 HSPs)
chr1 (72-106)||(3336323-3336357)
chr1 (72-102)||(42283616-42283646)
chr1 (73-102)||(36566892-36566921)
[»] scaffold0063 (1 HSPs)
scaffold0063 (72-105)||(51730-51763)
[»] chr8 (6 HSPs)
chr8 (73-102)||(9135314-9135343)
chr8 (73-102)||(42788116-42788145)
chr8 (73-105)||(10451655-10451687)
chr8 (73-105)||(34010802-34010834)
chr8 (72-108)||(37411532-37411568)
chr8 (72-108)||(40665916-40665952)
[»] scaffold0001 (1 HSPs)
scaffold0001 (71-107)||(439989-440025)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 23627638 - 23627952
Alignment:
Q  1 cacctacattacatatgtgttcaaagtttataaacaattggcgtaaataagctactgttggagtcaatcagcatatttatagggactaaaaatatattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23627638 cacctacattacatatgtgttcaaagtttataaacaattggtgtaaataagctactattggagtcaatcagcatatttatagggaccaaaaatatattta 23627737  T
Q  101 actctttactgtatacacttcaattttatgaacatatttacctcatgaggtatacgaaaagaaccactgtatatgtcattttttgtgatattttcaaagc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23627738 actctttagtgtatacacttcaattttatgaacatatttacctcatgaggtatgcgaaaagaaccaccgtatatgtcattttttgtgatattttcaaagc 23627837  T
Q  201 cctgaggagcctgcacaaacgcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgtttgagtacatgtc 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23627838 cctgaggagcctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgtttgagtacatgtc 23627937  T
Q  301 acaatctacattcag 315  Q
    |||||||||||||||    
T  23627938 acaatctacattcag 23627952  T

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Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 23640405 - 23640562
Alignment:
Q  158 aaagaaccactgtatatgtcattttttgtgatattttcaaagccctgaggagcctgcacaaacgcaatttcatgtcccttctcttcatccatgaagaagc 257  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  23640405 aaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagtctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagc 23640504  T
Q  258 aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23640505 aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcag 23640562  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 312
Target Start/End: Original strand, 23654354 - 23654476
Alignment:
Q  190 attttcaaagccctgaggagcctgcacaaacgcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgttt 289  Q
    |||||||||| |||| |||| ||||||||| ||||||||||| || |||||||||||||||||  | || || | ||||||||| ||||  |||||||||    
T  23654354 attttcaaaggcctgtggagactgcacaaaagcaatttcatggcctttctcttcatccatgaaataacagagagaatctcttatagattctgaattgttt 23654453  T
Q  290 gagtacatgtcacaatctacatt 312  Q
    |||||||||||||||||||||||    
T  23654454 gagtacatgtcacaatctacatt 23654476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 3173548 - 3173583
Alignment:
Q  73 atatttatagggactaaaaatatatttaactcttta 108  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3173548 atatttataaggactaaaaatatatttaactcttta 3173583  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 31184549 - 31184515
Alignment:
Q  73 atatttatagggactaaaaatatatttaactcttt 107  Q
    |||||||||||||||||||| ||||||||||||||    
T  31184549 atatttatagggactaaaaacatatttaactcttt 31184515  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 38472232 - 38472203
Alignment:
Q  73 atatttatagggactaaaaatatatttaac 102  Q
    ||||||||||||||||||||||||||||||    
T  38472232 atatttatagggactaaaaatatatttaac 38472203  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 14075191 - 14075155
Alignment:
Q  72 catatttatagggactaaaaatatatttaactcttta 108  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14075191 catatttatagggaccaaaaatatatttaactcttta 14075155  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 22787243 - 22787272
Alignment:
Q  73 atatttatagggactaaaaatatatttaac 102  Q
    ||||||||||||||||||||||||||||||    
T  22787243 atatttatagggactaaaaatatatttaac 22787272  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 38704706 - 38704677
Alignment:
Q  73 atatttatagggactaaaaatatatttaac 102  Q
    ||||||||||||||||||||||||||||||    
T  38704706 atatttatagggactaaaaatatatttaac 38704677  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 56360430 - 56360458
Alignment:
Q  80 tagggactaaaaatatatttaactcttta 108  Q
    |||||||||||||||||||||||||||||    
T  56360430 tagggactaaaaatatatttaactcttta 56360458  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 13471563 - 13471528
Alignment:
Q  73 atatttatagggactaaaaatatatttaactcttta 108  Q
    |||||||||||||||||||| |||||||||||||||    
T  13471563 atatttatagggactaaaaacatatttaactcttta 13471528  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 1975276 - 1975243
Alignment:
Q  72 catatttatagggactaaaaatatatttaactct 105  Q
    ||||||||||||||| ||||||||||||||||||    
T  1975276 catatttatagggaccaaaaatatatttaactct 1975243  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 3671376 - 3671409
Alignment:
Q  73 atatttatagggactaaaaatatatttaactctt 106  Q
    |||||||||||||||||||| |||||||||||||    
T  3671376 atatttatagggactaaaaacatatttaactctt 3671409  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 12422628 - 12422596
Alignment:
Q  73 atatttatagggactaaaaatatatttaactct 105  Q
    |||||||||||||| ||||||||||||||||||    
T  12422628 atatttatagggaccaaaaatatatttaactct 12422596  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 2269880 - 2269845
Alignment:
Q  71 gcatatttatagggactaaaaatatatttaactctt 106  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2269880 gcatatttatagggattaaaaatatatttaactctt 2269845  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 18257360 - 18257396
Alignment:
Q  72 catatttatagggactaaaaatatatttaactcttta 108  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  18257360 catatttatagggactaaaaacatatttaacccttta 18257396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 35240496 - 35240532
Alignment:
Q  72 catatttatagggactaaaaatatatttaactcttta 108  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  35240496 catatttatagggaccaaaaatatatttaacccttta 35240532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 38308575 - 38308539
Alignment:
Q  72 catatttatagggactaaaaatatatttaactcttta 108  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  38308575 catatttatagggaccaaaaacatatttaactcttta 38308539  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 42873978 - 42874013
Alignment:
Q  73 atatttatagggactaaaaatatatttaactcttta 108  Q
    |||||||||||||||||||| |||||||||||||||    
T  42873978 atatttatagggactaaaaacatatttaactcttta 42874013  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 18742565 - 18742595
Alignment:
Q  72 catatttatagggactaaaaatatatttaac 102  Q
    |||||||||||||||||||||||||||||||    
T  18742565 catatttatagggactaaaaatatatttaac 18742595  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 39541472 - 39541443
Alignment:
Q  73 atatttatagggactaaaaatatatttaac 102  Q
    ||||||||||||||||||||||||||||||    
T  39541472 atatttatagggactaaaaatatatttaac 39541443  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 32245390 - 32245424
Alignment:
Q  73 atatttatagggactaaaaatatatttaactcttt 107  Q
    |||||||||||||||||||| ||||||||||||||    
T  32245390 atatttatagggactaaaaacatatttaactcttt 32245424  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 32400913 - 32400949
Alignment:
Q  72 catatttatagggactaaaaatatatttaactcttta 108  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  32400913 catatttatagggactaaaaacatatttaacccttta 32400949  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 3336357 - 3336323
Alignment:
Q  72 catatttatagggactaaaaatatatttaactctt 106  Q
    ||||||||||||||| |||||||||||||||||||    
T  3336357 catatttatagggaccaaaaatatatttaactctt 3336323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 42283616 - 42283646
Alignment:
Q  72 catatttatagggactaaaaatatatttaac 102  Q
    |||||||||||||||||||||||||||||||    
T  42283616 catatttatagggactaaaaatatatttaac 42283646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 36566892 - 36566921
Alignment:
Q  73 atatttatagggactaaaaatatatttaac 102  Q
    ||||||||||||||||||||||||||||||    
T  36566892 atatttatagggactaaaaatatatttaac 36566921  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 51763 - 51730
Alignment:
Q  72 catatttatagggactaaaaatatatttaactct 105  Q
    ||||||||||||||||||||| ||||||||||||    
T  51763 catatttatagggactaaaaacatatttaactct 51730  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 9135343 - 9135314
Alignment:
Q  73 atatttatagggactaaaaatatatttaac 102  Q
    ||||||||||||||||||||||||||||||    
T  9135343 atatttatagggactaaaaatatatttaac 9135314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 42788116 - 42788145
Alignment:
Q  73 atatttatagggactaaaaatatatttaac 102  Q
    ||||||||||||||||||||||||||||||    
T  42788116 atatttatagggactaaaaatatatttaac 42788145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 10451687 - 10451655
Alignment:
Q  73 atatttatagggactaaaaatatatttaactct 105  Q
    |||||||||||||||||||| ||||||||||||    
T  10451687 atatttatagggactaaaaacatatttaactct 10451655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 34010802 - 34010834
Alignment:
Q  73 atatttatagggactaaaaatatatttaactct 105  Q
    |||||||||||||||||||| ||||||||||||    
T  34010802 atatttatagggactaaaaaaatatttaactct 34010834  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 37411568 - 37411532
Alignment:
Q  72 catatttatagggactaaaaatatatttaactcttta 108  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  37411568 catatttatagggacaaaaaatatatttaacccttta 37411532  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 40665952 - 40665916
Alignment:
Q  72 catatttatagggactaaaaatatatttaactcttta 108  Q
    |||||||||| |||||||||||||||||||| |||||    
T  40665952 catatttataaggactaaaaatatatttaacccttta 40665916  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 439989 - 440025
Alignment:
Q  71 gcatatttatagggactaaaaatatatttaactcttt 107  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  439989 gcatatttatagggacaaaaaatatatttaacccttt 440025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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