View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7027_low_6 (Length: 241)
Name: NF7027_low_6
Description: NF7027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7027_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23627658 - 23627434
Alignment:
| Q |
1 |
aacacatatgtaatgtaggtggatttacatggctttgatggatttggcgggcccatgtatattggaactggctgctttcatagaagagatgcactatgtg |
100 |
Q |
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| T |
23627658 |
aacacatatgtaatgtaggtggatttacatggctttgatggatttggcgggcccatgtatattggaactggctgctttcatagaagagatgcactatgtg |
23627559 |
T |
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| Q |
101 |
gaagaaagtatagtgatcaatacaagattgattggaagaatgcaaatgatgaaaatattgatcatatgataaaagaagcaagcttgcaagagctggaaga |
200 |
Q |
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| T |
23627558 |
gaagaaagtatagtgatcaatacaagattgattggaagaatgcaaatgatgaaaatattgatcatatgataaaagaagtaagcttgcaagagctagaaga |
23627459 |
T |
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| Q |
201 |
aaaatcaaagactcttgcaagttgt |
225 |
Q |
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| T |
23627458 |
aaaatcaaagactcttgcaagttgt |
23627434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 23640093 - 23639897
Alignment:
| Q |
29 |
atggctttgatggatttggcgggcccatgtatattggaactggctgctttcatagaagagatgcactatgtggaagaaagtatagtgatcaatacaagat |
128 |
Q |
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| T |
23640093 |
atggcttagatggatttggtgggcctttgtatattggaactggctgctttcatagaagagatgtactatgtggaagaaagtatagtgatcaatgcaagat |
23639994 |
T |
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| Q |
129 |
tgattggaagaatgcaaatgatgaaaatattgatcatatgataaaagaagcaagcttgcaagagctggaagaaaaatcaaagactcttgcaagttgt |
225 |
Q |
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| T |
23639993 |
tgattggaagaatgtaaatgatgaaaatattgatcatatgataaaagtagcaagcttgcaagagctagaagaaaaatcaaagactcttgcaagttgt |
23639897 |
T |
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