View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7027_low_8 (Length: 225)
Name: NF7027_low_8
Description: NF7027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7027_low_8 |
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| [»] scaffold1207 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 11170567 - 11170757
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170567 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
11170666 |
T |
|
| Q |
121 |
gtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11170667 |
gtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacc |
11170757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 11275951 - 11276141
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11275951 |
ttcagcctcctaatggctcttggatctccactaatgtcatttttatgcttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
11276050 |
T |
|
| Q |
121 |
gtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
11276051 |
gtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacc |
11276141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 11209389 - 11209579
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
120 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||| | ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11209389 |
ttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
11209488 |
T |
|
| Q |
121 |
gtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
11209489 |
gtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacc |
11209579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 11161134 - 11161324
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
120 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11161134 |
ttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtctt |
11161233 |
T |
|
| Q |
121 |
gtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||| |
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| T |
11161234 |
gtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacc |
11161324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 11196720 - 11196910
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
120 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11196720 |
ttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtctt |
11196819 |
T |
|
| Q |
121 |
gtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||||||||| |||| ||||||||||| |||| |||||||||| |||||||||||| |
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|
| T |
11196820 |
gtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacc |
11196910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 11199890 - 11200075
Alignment:
| Q |
26 |
cctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtccc |
125 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11199890 |
cctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttgtccc |
11199989 |
T |
|
| Q |
126 |
ccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
|| |||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||| ||||| |||| |||||||||||| |
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| T |
11199990 |
ccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacc |
11200075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 11156267 - 11156454
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
120 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||| ||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
11156267 |
ttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactcattcacaaaatggttcaccattgtattatcaaagtctt |
11156366 |
T |
|
| Q |
121 |
gtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccacc |
208 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
11156367 |
gtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacc |
11156454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 11133000 - 11133113
Alignment:
| Q |
30 |
ctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccga |
129 |
Q |
| |
|
|||| |||| || |||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
11133000 |
ctaagggcttttcgatctccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccga |
11133099 |
T |
|
| Q |
130 |
ggtgagtgtctcca |
143 |
Q |
| |
|
||||||| |||||| |
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|
| T |
11133100 |
ggtgagtatctcca |
11133113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 11241593 - 11241511
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccat |
103 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
11241593 |
ttcaacctcctaagggctcttggatctctactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 11314881 - 11314714
Alignment:
| Q |
44 |
atctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcca |
143 |
Q |
| |
|
||||||||||||||| | ||||| | | || |||| ||| |||||||| |||||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
11314881 |
atctccactaatgtctattttatacctcttccggaacacttccacaaaatatttcaccattgtattattgaagtcttgtcccccaaggtgagtgtctccg |
11314782 |
T |
|
| Q |
144 |
ttaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
|| |||| |||| ||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||| |
|
|
| T |
11314781 |
ccaacggccctaactttgatggcaccattctcaagtgtgagaatagacacatccaaagtaccgccacc |
11314714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 11241488 - 11241427
Alignment:
| Q |
150 |
gccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
11241488 |
gccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacc |
11241427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 885 - 1075
Alignment:
| Q |
21 |
ttcagcctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| ||| || |||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
885 |
ttcagcctcctaacggctcttggatctccactaatgtcgattttatacttccttaagaacactttcacaaaatggttcaccattgcgttatcaaagtctt |
984 |
T |
|
| Q |
121 |
gtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacc |
211 |
Q |
| |
|
| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
985 |
gccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacc |
1075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 12528558 - 12528622
Alignment:
| Q |
78 |
aactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcc |
142 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||| | ||| || |||||||||||||| |
|
|
| T |
12528558 |
aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctcc |
12528622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 7542228 - 7542340
Alignment:
| Q |
26 |
cctcctaatggctcttggatctccactaatgtcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtccc |
125 |
Q |
| |
|
|||||| | |||| |||||| ||||||||||| | ||| | ||||||| |||||||| ||||| | |||| ||||| |||||||||||||| ||| |
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|
| T |
7542228 |
cctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcgccattctattatcaaagtcttctcca |
7542327 |
T |
|
| Q |
126 |
ccgaggtgagtgt |
138 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
7542328 |
ccaaggtgagtgt |
7542340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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