View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7027_low_9 (Length: 224)
Name: NF7027_low_9
Description: NF7027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7027_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 19541763 - 19541613
Alignment:
| Q |
52 |
tagacaagaaatcagtttgaggagtatcatataaaatagagaaacaaagataccaatgagatgcacaatacaatgacaagttatttaaaatctttcaatg |
151 |
Q |
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| T |
19541763 |
tagacaagaaatcagtttgaggagtatcatataaaatagagaaacaaagataccaatgagatgcacaatacaatgacaagttatttaaaatctttcaatg |
19541664 |
T |
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| Q |
152 |
tccatattgtgcagcaagatctttcaatgtctttaacccaatccgtgtaga |
202 |
Q |
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| T |
19541663 |
tccatattgtgcagcaagatccttcaatgtctttaacccaatccgtgtaga |
19541613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 54074503 - 54074379
Alignment:
| Q |
26 |
taagttgttatagttctataattatcta-gacaagaaatcagtttgaggagtatcatataaaatagagaaacaaagataccaatgagatgcacaatacaa |
124 |
Q |
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| T |
54074503 |
taagttgtaatagttctataattatcaaagacaata---cagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcacaatataa |
54074407 |
T |
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| Q |
125 |
tgacaagttatttaaaatctttcaatgt |
152 |
Q |
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| T |
54074406 |
tgacaatttattcaaaaactttcaatgt |
54074379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 25649557 - 25649629
Alignment:
| Q |
35 |
atagttctataattatctagacaagaaatcagtttgaggagtatcatataaaatagagaaacaaagataccaa |
107 |
Q |
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| T |
25649557 |
atagttctataattatctagacaataaaatagtttgaggagtatcatgtaaaatagagaaacaaagataccaa |
25649629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 21134855 - 21134731
Alignment:
| Q |
26 |
taagttgttatagttctataattatcta-gacaagaaatcagtttgaggagtatcatataaaatagagaaacaaagataccaatgagatgcacaatacaa |
124 |
Q |
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| T |
21134855 |
taagttgtaatagttctataattatcaaagacaata---cagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcacaatataa |
21134759 |
T |
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| Q |
125 |
tgacaagttatttaaaatctttcaatgt |
152 |
Q |
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|||||| ||||| |||| |||||||||| |
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| T |
21134758 |
tgacaatttattcaaaaactttcaatgt |
21134731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 41702346 - 41702470
Alignment:
| Q |
26 |
taagttgttatagttctataattatcta-gacaagaaatcagtttgaggagtatcatataaaatagagaaacaaagataccaatgagatgcacaatacaa |
124 |
Q |
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| T |
41702346 |
taagttgtaatagttctataattatcaaagacaata---cagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcacaatataa |
41702442 |
T |
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| Q |
125 |
tgacaagttatttaaaatctttcaatgt |
152 |
Q |
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|||||| ||||| |||| |||||||||| |
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| T |
41702443 |
tgacaatttattcaaaaactttcaatgt |
41702470 |
T |
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