View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_high_18 (Length: 300)
Name: NF7028_high_18
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 54416203 - 54415925
Alignment:
| Q |
1 |
gggtttcatgagtaattcatatgctagtgatccgtaataagagtataaaaatcaaagggaagcaaagtaacaagtaaaatttgatgttaatcactcgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54416203 |
gggtttcatgagtaattcatatgctagtgatccataataagagtataaaaatcaaagggaagcaaagtaacaagtaaaatttgatgttaatcactcgtaa |
54416104 |
T |
|
| Q |
101 |
attaccgctggatgtgtggaaggggagtagggagcctgtgtttaccttatatagcttataagcccacagccaataacaattcataactaactgactggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54416103 |
attaccgctggatgtgtggaaggggagtagggagcctgtgtttaccttatatagcttataagcccacagccaataacaattcataactaactgactggag |
54416004 |
T |
|
| Q |
201 |
ttagcagctgtattgtcaatacagtattgacaggagcactggatgtgctaggagaacagtttcccttcccctatccccc |
279 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54416003 |
ttggcagctgtattgtcaatacagtattgacaggagcactggatgtgcaaggagaacagtttcccttcccctatccccc |
54415925 |
T |
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